View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9031_low_4 (Length: 608)
Name: NF9031_low_4
Description: NF9031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9031_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 13 - 592
Target Start/End: Original strand, 44459595 - 44460174
Alignment:
| Q |
13 |
ggacatcaatgaattcagaagaatattgatacataatgaaatacaactgttgctttcaattgtttttcatgtattatctccacaagatcttacccatttg |
112 |
Q |
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| T |
44459595 |
ggacatcaatgaattcagaagaatattgatacataatgaaatacaactgttgctttcaattgtttttcatgtattatctccacaagatcttacccatttg |
44459694 |
T |
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| Q |
113 |
atagttgaccgggctaaggcgtccattggatcgatacattttttgagaagaggatcgtcatggggcaagacatctcgcatttcatcagaagcaaggataa |
212 |
Q |
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| T |
44459695 |
atagttgaccgggctaaggcgtccattggatcgatacattttttgagaagaggatcgtcatggggcaagacatctcgcatttcatcagaagcaaggataa |
44459794 |
T |
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| Q |
213 |
caaaattaactgccctcaccaaaagaacttgaagcgcaattctcaatagattgcatgccccttccatgtcctttcggctcaaagcttcagtcgcaggtat |
312 |
Q |
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| T |
44459795 |
caaaattaactgccctcaccaaaagaacttgaagcgcaattctcaatagattgcatgccccttccatgtcctttcggctcaaagcttcagtcgcaggtat |
44459894 |
T |
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| Q |
313 |
cactgtatgctccatagttgctctatctggcaggataacctcaaagccctgaatatatattagtaaataagatgaacacattcacatctctattgcttgt |
412 |
Q |
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| T |
44459895 |
cactgtatgctccatagttgctctatctggcaggataacctcaaagccctgaatatatattagtaaataagatgaacacattcacatctctattgcttgt |
44459994 |
T |
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| Q |
413 |
caacataattcaacatgatcttacttctaagcattgcaacgtttgaagaaaaagtagaaaacaactagtacatatgaagaacaagtaggaattgggaagg |
512 |
Q |
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| T |
44459995 |
caacataattcaacatgatcttacttctaagcattgcaacgtttgaagaaaaagtagaaaacaactagtacatatgaagaacaagtaggaattgggaagg |
44460094 |
T |
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| Q |
513 |
taaaaaacaactactgcatatatacatacttgacagtcaactccatgttcacaaacaaagaatcgtaaaaacgttatttg |
592 |
Q |
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| T |
44460095 |
taaaaaacaactactgcatatatacatacttgacagtcaactccatgttcacaaaaaaagaatcggaaaaacgttatttg |
44460174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 395 - 457
Target Start/End: Original strand, 37514879 - 37514940
Alignment:
| Q |
395 |
cacatctctattgcttgtcaacataattcaacatgatcttacttctaagcattgcaacgtttg |
457 |
Q |
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| T |
37514879 |
cacatatctattgcttgtcaacacaattcaacatgatcttacttc-aagcattgtaatgtttg |
37514940 |
T |
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