View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9031_low_9 (Length: 457)

Name: NF9031_low_9
Description: NF9031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9031_low_9
NF9031_low_9
[»] chr3 (6 HSPs)
chr3 (205-441)||(12537669-12537908)
chr3 (193-282)||(31688596-31688685)
chr3 (193-282)||(31911891-31911980)
chr3 (193-282)||(31945539-31945628)
chr3 (206-282)||(53689781-53689857)
chr3 (193-258)||(52311028-52311093)
[»] scaffold0096 (1 HSPs)
scaffold0096 (205-441)||(28674-28913)
[»] chr2 (1 HSPs)
chr2 (193-282)||(7828487-7828576)
[»] chr6 (4 HSPs)
chr6 (259-382)||(27766170-27766292)
chr6 (193-282)||(27444858-27444947)
chr6 (194-268)||(20910042-20910115)
chr6 (194-268)||(20924490-20924563)
[»] chr5 (1 HSPs)
chr5 (251-382)||(12871011-12871141)
[»] chr7 (1 HSPs)
chr7 (193-282)||(18940106-18940195)
[»] scaffold0003 (2 HSPs)
scaffold0003 (193-282)||(42411-42500)
scaffold0003 (193-282)||(35740-35829)
[»] chr1 (4 HSPs)
chr1 (384-441)||(14184999-14185059)
chr1 (384-441)||(31770293-31770353)
chr1 (195-268)||(41326935-41327007)
chr1 (384-441)||(7607733-7607793)
[»] chr8 (1 HSPs)
chr8 (194-268)||(42313158-42313231)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 205 - 441
Target Start/End: Original strand, 12537669 - 12537908
Alignment:
Q  205 taaacagaaactcacaaccccatttagttcttcaactatttttaactaaagctagaaacttttcaaaacaaaaattaagaaacaaccaatctgacaaacg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||    
T  12537669 taaacagaaactcacaaccccatttagttcttcaactatttttaactaaaggtagaaacttttcaaaacaaaaattaagaaaaaaccaatctaacaaacg 12537768  T
Q  305 atatagttcaaaatgttacaaatgaatagagaaaccaactattttaagttaaaaagttcataactttcttctacaaacttagaatccattttgatagaac 404  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12537769 atatagttcaaaatgtcacaaatgaatagagaaaccaacgattttaagttgaaaagttcataactttcttctacaaacttagaatccattttgatagaac 12537868  T
Q  405 catcatgtaagataaattctgac---atagaagaggtatt 441  Q
    ||||| |||||||||||||||||   ||||||||||||||    
T  12537869 catcaagtaagataaattctgacctaatagaagaggtatt 12537908  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 31688685 - 31688596
Alignment:
Q  193 tagaaattctattaaacagaaactcacaaccccatttagttcttcaactatttttaactaaagctagaaacttttcaaaacaaaaattaa 282  Q
    |||||||| ||| ||| | ||||||||||||||||| ||||||||||||||||| ||||||||||| |||   || ||||||||||||||    
T  31688685 tagaaattatataaaataaaaactcacaaccccattaagttcttcaactattttgaactaaagctaaaaaaaattaaaaacaaaaattaa 31688596  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 31911891 - 31911980
Alignment:
Q  193 tagaaattctattaaacagaaactcacaaccccatttagttcttcaactatttttaactaaagctagaaacttttcaaaacaaaaattaa 282  Q
    |||||||| ||| ||| | ||||||||||||||||| ||||||||||||||||| ||||||||||| |||   || ||||||||||||||    
T  31911891 tagaaattatataaaataaaaactcacaaccccattaagttcttcaactattttgaactaaagctaaaaaaaattaaaaacaaaaattaa 31911980  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 31945539 - 31945628
Alignment:
Q  193 tagaaattctattaaacagaaactcacaaccccatttagttcttcaactatttttaactaaagctagaaacttttcaaaacaaaaattaa 282  Q
    |||||||| ||| ||| | ||||||||||||||||| ||||||||||||||||| ||||||||||| |||   || ||||||||||||||    
T  31945539 tagaaattatataaaataaaaactcacaaccccattaagttcttcaactattttgaactaaagctaaaaaaaattaaaaacaaaaattaa 31945628  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 53689857 - 53689781
Alignment:
Q  206 aaacagaaactcacaaccccatttagttcttcaactatttttaactaaagctagaaacttttcaaaacaaaaattaa 282  Q
    ||||||||||||||| |||  ||||||| |||||| ||||||||| ||||||| ||||||||| ||| || ||||||    
T  53689857 aaacagaaactcacagccctgtttagttattcaacaatttttaaccaaagctaaaaacttttccaaaaaagaattaa 53689781  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 52311028 - 52311093
Alignment:
Q  193 tagaaattctattaaacagaaactcacaaccccatttagttcttcaactatttttaactaaagcta 258  Q
    |||||||| | | ||||||||||||||| |||  ||||||| |||||| ||||||||| |||||||    
T  52311028 tagaaattatttaaaacagaaactcacagccctgtttagttattcaacaatttttaaccaaagcta 52311093  T

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Target: scaffold0096 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 205 - 441
Target Start/End: Complemental strand, 28913 - 28674
Alignment:
Q  205 taaacagaaactcacaaccccatttagttcttcaactatttttaactaaagctagaaacttttcaaaacaaaaattaagaaacaaccaatctgacaaacg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||    
T  28913 taaacagaaactcacaaccccatttagttcttcaactatttttaactaaaggtagaaacttttcaaaacaaaaattaagaaataaccaatctaacaaacg 28814  T
Q  305 atatagttcaaaatgttacaaatgaatagagaaaccaactattttaagttaaaaagttcataactttcttctacaaacttagaatccattttgatagaac 404  Q
    |||||||||||||||| |||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28813 atatagttcaaaatgtcacaaatgaatagagaacccaacgattttaagttgaaaagttcataactttcttctacaaacttagaatccattttgatagaac 28714  T
Q  405 catcatgtaagataaattctgac---atagaagaggtatt 441  Q
    ||||| |||||||| ||||||||   ||||||||||||||    
T  28713 catcaagtaagatagattctgacctaatagaagaggtatt 28674  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 7828487 - 7828576
Alignment:
Q  193 tagaaattctattaaacagaaactcacaaccccatttagttcttcaactatttttaactaaagctagaaacttttcaaaacaaaaattaa 282  Q
    |||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||||| | |||||||||||||||||||||    
T  7828487 tagaaattatataaaacagaaactcacagccccgtttagttcttcaactatttttaaccaaagctaaagacttttcaaaacaaaaattaa 7828576  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 382
Target Start/End: Complemental strand, 27766292 - 27766170
Alignment:
Q  259 gaaacttttcaaaacaaaaattaagaaacaaccaatctgacaaacgatatagttcaaaatgttacaaatgaatagagaaaccaactattttaagttaaaa 358  Q
    ||||||||||||||||||| | |||||||||||||| |  |||| ||| | ||||||||| | |||||| |||||| |||||||  ||||| |||| |||    
T  27766292 gaaacttttcaaaacaaaactaaagaaacaaccaatgtagcaaatgattttgttcaaaatttcacaaat-aatagaaaaaccaatgattttgagttgaaa 27766194  T
Q  359 agttcataactttcttctacaaac 382  Q
    ||||||||| ||||||||||||||    
T  27766193 agttcataattttcttctacaaac 27766170  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 27444947 - 27444858
Alignment:
Q  193 tagaaattctattaaacagaaactcacaaccccatttagttcttcaactatttttaactaaagctagaaacttttcaaaacaaaaattaa 282  Q
    |||||||| ||| ||||| |||||||||||||| || ||||||||||||||||| |||| |||||| |||   || ||||||||||||||    
T  27444947 tagaaattatataaaacaaaaactcacaaccccgttaagttcttcaactattttgaactgaagctaaaaaaaattaaaaacaaaaattaa 27444858  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 20910042 - 20910115
Alignment:
Q  194 agaaattctattaaacagaaactcacaaccccatttagttcttcaactatttttaactaaagctagaaacttttc 268  Q
    ||||||| ||| | ||||||||||||| ||   |||||||||||||| ||||||||| ||||||| |||||||||    
T  20910042 agaaattatataacacagaaactcacagccatgtttagttcttcaacaatttttaaccaaagcta-aaacttttc 20910115  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 20924490 - 20924563
Alignment:
Q  194 agaaattctattaaacagaaactcacaaccccatttagttcttcaactatttttaactaaagctagaaacttttc 268  Q
    ||||||| ||| | ||||||||||||| ||   |||||||||||||| ||||||||| ||||||| |||||||||    
T  20924490 agaaattatataacacagaaactcacagccatgtttagttcttcaacaatttttaaccaaagcta-aaacttttc 20924563  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 382
Target Start/End: Complemental strand, 12871141 - 12871011
Alignment:
Q  251 taaagctagaaacttttcaaaacaaaaattaagaaacaaccaatctgacaaacgatatagttcaaaatgttacaaatgaatagagaaaccaactatttta 350  Q
    ||||||| ||||||||||||||||||| | |||||||||||||| |  |||| | | | ||||||||| | |||||| |||||| |||||||  |||||     
T  12871141 taaagctggaaacttttcaaaacaaaactaaagaaacaaccaatgtagcaaatggttttgttcaaaatttcacaaat-aatagaaaaaccaatgattttg 12871043  T
Q  351 agttaaaaagttcataactttcttctacaaac 382  Q
    |||| |||||||||||| ||||||||||||||    
T  12871042 agttgaaaagttcataattttcttctacaaac 12871011  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 18940106 - 18940195
Alignment:
Q  193 tagaaattctattaaacagaaactcacaaccccatttagttcttcaactatttttaactaaagctagaaacttttcaaaacaaaaattaa 282  Q
    |||||||| ||| |||||||||||||||||||  |||| ||||||||||||||||||  ||||||  || ||||||||||||||||||||    
T  18940106 tagaaattatataaaacagaaactcacaaccctgtttaattcttcaactatttttaatcaaagcttaaatcttttcaaaacaaaaattaa 18940195  T

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Target: scaffold0003 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 42411 - 42500
Alignment:
Q  193 tagaaattctattaaacagaaactcacaaccccatttagttcttcaactatttttaactaaagctagaaacttttcaaaacaaaaattaa 282  Q
    |||||||| ||| ||||| |||||||||||||| || ||||||||||||||||| ||||||||||| |||   || ||||||||||||||    
T  42411 tagaaattatataaaacaaaaactcacaaccccgttaagttcttcaactattttgaactaaagctaaaaaaaattaaaaacaaaaattaa 42500  T

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Target: scaffold0003; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 35740 - 35829
Alignment:
Q  193 tagaaattctattaaacagaaactcacaaccccatttagttcttcaactatttttaactaaagctagaaacttttcaaaacaaaaattaa 282  Q
    |||||||| ||| ||||| |||||||||||||| || | ||||||||||||||| ||||||||||| |||   || ||||||||||||||    
T  35740 tagaaattatataaaacaaaaactcacaaccccgttaaattcttcaactattttgaactaaagctaaaaaaaattaaaaacaaaaattaa 35829  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 441
Target Start/End: Complemental strand, 14185059 - 14184999
Alignment:
Q  384 tagaatccattttgatagaaccatcatgtaagataaattctgac---atagaagaggtatt 441  Q
    ||||||| |||||||||||||||||  |||||||||||||||||   ||||||||||||||    
T  14185059 tagaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtatt 14184999  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 31770293 - 31770353
Alignment:
Q  384 tagaatccattttgatagaaccatcatgtaagataaattctgac---atagaagaggtatt 441  Q
    ||||||| |||||||||||||||||  |||||||||||||||||   ||||||||||||||    
T  31770293 tagaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtatt 31770353  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 41326935 - 41327007
Alignment:
Q  195 gaaattctattaaacagaaactcacaaccccatttagttcttcaactatttttaactaaagctagaaacttttc 268  Q
    |||||| ||| | ||||||||||||||||   |||||||||||||| ||||||||| ||||||| |||||||||    
T  41326935 gaaattatataacacagaaactcacaaccatgtttagttcttcaacaatttttaaccaaagcta-aaacttttc 41327007  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 7607733 - 7607793
Alignment:
Q  384 tagaatccattttgatagaaccatcatgtaagataaattctgac---atagaagaggtatt 441  Q
    ||||||| |||||||||||||||||  |||||||||||| ||||   ||||||||||||||    
T  7607733 tagaatctattttgatagaaccatctagtaagataaattatgacctaatagaagaggtatt 7607793  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 42313158 - 42313231
Alignment:
Q  194 agaaattctattaaacagaaactcacaaccccatttagttcttcaactatttttaactaaagctagaaacttttc 268  Q
    ||||||| ||| | |||||||||||||| |   |||||||||||||| ||||||||| ||||||| |||||||||    
T  42313158 agaaattatataacacagaaactcacaatcatgtttagttcttcaacaatttttaaccaaagcta-aaacttttc 42313231  T

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