View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9032_low_10 (Length: 418)
Name: NF9032_low_10
Description: NF9032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9032_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 36977845 - 36978246
Alignment:
| Q |
1 |
tctcaattgaatatgaaatttgaccttgtaaattattatttgagagattaaggttttgaaggtgatgacaattttcaaacaaccaatcagggatagtcat |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36977845 |
tctcaattgaatatggaatttgaccttgtaaattattatttgagagattaaggttttgaaggtgatgacaattttcaaacaaccaatcagggatagtcat |
36977944 |
T |
|
| Q |
101 |
attgaaattattgccagacagatcaagggttacaagagaatcaaaattcatttctggtggaggagacataggtagtttgtgaagttggcaatccgataaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
36977945 |
attgaaattattgccagacagatcaagggttacaagagaatcaaaattcatttctggtggaggagacgtaggtagtttgtgaagttggcaacccgataaa |
36978044 |
T |
|
| Q |
201 |
cgcaatgtatcaagagaatgaagtatcactctgatgtcgtgaaaccaatcattttgacaacgactaagatcaacaccacttaaatcaagaattttcaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36978045 |
cgcaatgtatcaagagaatgaagtatcactctgatgtcatgaaaccaatcattttgacaacgactaagatcaacaccacttaaatcaagaattttcaagg |
36978144 |
T |
|
| Q |
301 |
aagaaagtccatgaagccattttagattattgacatagaaactattgccactcaaatcaagtgattcaagtagagaaaggtttccaagattatctaagag |
400 |
Q |
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| T |
36978145 |
aagaaagtccatgaagccattttagattattgacatagaaactattgccactcaaatgaagtgattcaagtagagaaaggtttccaagattatctaagag |
36978244 |
T |
|
| Q |
401 |
gt |
402 |
Q |
| |
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|| |
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| T |
36978245 |
gt |
36978246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 4 - 394
Target Start/End: Original strand, 36966109 - 36966496
Alignment:
| Q |
4 |
caattgaatatgaaatttgaccttgtaaattattatttgagagattaaggttttgaaggtgatgacaattttcaaacaaccaatcagggatagtcatatt |
103 |
Q |
| |
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|||||||||||| || |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||| || | ||| |
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| T |
36966109 |
caattgaatatggtataagaccttgtaaattattcaatgagagattaagattttgaaggtgatgacacttttcaaacaaccaatcaggggtact---att |
36966205 |
T |
|
| Q |
104 |
gaaattattgccagacagatcaagggttacaagagaatcaaaattcatttctggtggaggagacataggtagtttgtgaagttggcaatccgataaacgc |
203 |
Q |
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||||| |||| |||||||||||| |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
36966206 |
gaaataattgatagacagatcaagagttacaagagaatcaaaattcacttcaggtggaggagatgtaggtagtttgtgaagttggcaacccgataaacgc |
36966305 |
T |
|
| Q |
204 |
aatgtatcaagagaatgaagtatcactctgatgtcgtgaaaccaatcattttgacaacgactaagatcaacaccacttaaatcaagaattttcaaggaag |
303 |
Q |
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||||| ||||||||||||||||| |||| || || |||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||||| |
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| T |
36966306 |
aatgtttcaagagaatgaagtattgctcttatatcatgaaaccaatcattttcacaactactaagatcaacaccacttaaatcgagaattttcatggaag |
36966405 |
T |
|
| Q |
304 |
aaagtccatgaagccattttagattattgacatagaaactattgccactcaaatcaagtgattcaagtagagaaaggtttccaagattatc |
394 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
36966406 |
aaagtccttgaagccattttagattattgacatagaaagcattgccactcaaatcaagtgattcaagtagagacaggtttacaagattatc |
36966496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 5867226 - 5866825
Alignment:
| Q |
1 |
tctcaattgaatatgaaatttgaccttgtaaattattatttgagagattaaggttttgaaggtgatgacaattttcaaacaaccaatcagggatagtcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5867226 |
tctcaattgaatatgaaatttgaccttgtaaattattatttgagagattaaggttttgaaggtgatgacaattttcaaacaaccaatcagggatagtcat |
5867127 |
T |
|
| Q |
101 |
attgaaattattgccagacagatcaagggttacaagagaatcaaaattcatttctggtggaggagacataggtagtttgtgaagttggcaatccgataaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
5867126 |
attgaaattattgccagacagatcaagggttacaagagaatcaaaattcatttctggtggaggagacgtaggtagtttgtgaagttggcaacccgataaa |
5867027 |
T |
|
| Q |
201 |
cgcaatgtatcaagagaatgaagtatcactctgatgtcgtgaaaccaatcattttgacaacgactaagatcaacaccacttaaatcaagaattttcaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5867026 |
cgcaatgtatcaagagaatgaagtatcactctgatgtcatgaaaccaatcattttgacaacgactaagaacaacaccacttaaatcaagaattttcaagg |
5866927 |
T |
|
| Q |
301 |
aagaaagtccatgaagccattttagattattgacatagaaactattgccactcaaatcaagtgattcaagtagagaaaggtttccaagattatctaagag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5866926 |
aagaaagtccatgaagccattttagattattgacatagaaactattgtcactcaaatcaagtgattcaagtagagaaaggtttccaagattatctaagag |
5866827 |
T |
|
| Q |
401 |
gt |
402 |
Q |
| |
|
|| |
|
|
| T |
5866826 |
gt |
5866825 |
T |
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Back To:
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