View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9032_low_13 (Length: 400)
Name: NF9032_low_13
Description: NF9032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9032_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 29193671 - 29193335
Alignment:
| Q |
19 |
acatcattacactattacaatttatcacatctaacagtgttagaagcaacttgtatatatgtgcgttacacttacctgtttctgccggcgacgatgatcc |
118 |
Q |
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| T |
29193671 |
acatcattacactattacaatttatcacatctaacagtgttagaagcaacttgtatatatgtgcgttaaacttacctgtttctgccggcgacgatgatcc |
29193572 |
T |
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| Q |
119 |
gaaggtcagggcagaagttggacagtgcggtggcggttgatcctccgacacgacctgttccgccgagaaccaacacttttgagttgcggattttgtccgg |
218 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29193571 |
gaaggtcagggcagaagttggagagtgcggtggcggttgatcctccgacacgacctgttccgccgagaaccaacacttttgagttgcggattttgtccgg |
29193472 |
T |
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| Q |
219 |
tagctcagggaggttggtggcggaggcggttaccttgaaattcaaattgagaggtaatgaaattggcgccattgattggtttggtttgatgagattggtt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
29193471 |
tagctcagggaggttggtggcggaggcggttaccttgaaattcaaattgagaggtaatgaagttggcgccattgattgg-----tttgatgagattggtt |
29193377 |
T |
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| Q |
319 |
agtttctcttcatttctcagtgttgcactttgtcttatcgcc |
360 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29193376 |
agtttctcttcatttgtcagtgttgcactttgtcttatcgcc |
29193335 |
T |
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