View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9032_low_16 (Length: 380)

Name: NF9032_low_16
Description: NF9032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9032_low_16
NF9032_low_16
[»] chr2 (7 HSPs)
chr2 (11-380)||(41486578-41486947)
chr2 (215-380)||(41487445-41487610)
chr2 (14-110)||(41488768-41488867)
chr2 (131-194)||(41488663-41488726)
chr2 (192-249)||(40753902-40753958)
chr2 (241-299)||(40753830-40753883)
chr2 (330-380)||(41479424-41479473)


Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 41486947 - 41486578
Alignment:
Q  11 atggacatcaattgcaatatttgagaaattattgggaaaatttatagaaatattaaatgtctaaaatcatgcaaataaggaaaacttaagataatcactg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41486947 atggacatcaattgcaatatttgagaaattattgggaaaatttatagaaatattaaatgtctaaaatcatgcaaataaggaaaacttaagataatcactg 41486848  T
Q  111 tcacaaaaaatatctgatgtactttagaggattgaactggtacacagagcatcaagatataaatatataaaacttccagctaattgtttttaaggcaaca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41486847 tcacaaaaaatatctgatgtactttagaggattgaactggtacacagagcatcaagatataaatatataaaacttccagctaattgtttttaaggcaaca 41486748  T
Q  211 tattgctaattgttataaaaacagttcaaactaaatcaagaatataacgcttttttattgtatggaaatgatataatgctttatttttaggttcaggtac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41486747 tattgctaattgttataaaaacagttcaaactaaatcaagaatataacgcttttttattgtatggaaatgatataatgctttatttttaggttcaggtac 41486648  T
Q  311 gatttaaaatgaatttaacttcaagacaaaaatttaaaccagactgcaaaagggagacaattgataccac 380  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41486647 gatttcaaatgaatttaacttcaagacaaaaatttaaaccagactacaaaagggagacaattgataccac 41486578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 215 - 380
Target Start/End: Complemental strand, 41487610 - 41487445
Alignment:
Q  215 gctaattgttataaaaacagttcaaactaaatcaagaatataac-gcttttttattgtatggaaatgatataatgctttatttttaggttcaggtacgat 313  Q
    ||||||||||| || ||||||||||||||| |||||| |||||  | ||||||||||||||||||       |||||||||||||||| |||||||||||    
T  41487610 gctaattgtta-aagaacagttcaaactaactcaagactataaatggttttttattgtatggaaa-------atgctttatttttaggctcaggtacgat 41487519  T
Q  314 ttaaaatgaatttaac--------ttcaagacaaaaatttaaaccagactgcaaaagggagacaattgataccac 380  Q
    || |||||||||||||        |||||||||||||||||||||||||| ||| | |||||| |||||||||||    
T  41487518 ttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaaca-ggagacgattgataccac 41487445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 41488867 - 41488768
Alignment:
Q  14 gacatcaattgcaatatttgagaaattattgggaaaatttatagaa---atattaaatgtctaaaatcatgcaaataaggaaaacttaagataatcactg 110  Q
    ||||||||||||| ||||| |||||||| ||||||||| || ||||   ||| || ||| ||||||||||||||||||| |||| |||||||||| ||||    
T  41488867 gacatcaattgcagtattttagaaattactgggaaaatgtacagaagaaatactagatgactaaaatcatgcaaataagcaaaatttaagataattactg 41488768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 41488726 - 41488663
Alignment:
Q  131 actttagaggattgaactggtacacagagcatcaagatataaatatataaaacttccagctaat 194  Q
    |||||||||||||||||||||| | ||||| |||| ||||||||||||| |||||| |||||||    
T  41488726 actttagaggattgaactggtatatagagcgtcaatatataaatatatagaacttctagctaat 41488663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 40753958 - 40753902
Alignment:
Q  192 aattgtttttaaggcaacatattgctaattgttataaaaacagttcaaactaaatcaa 249  Q
    |||| ||||||||||||||| | ||| |||||| ||||||||||||||||||||||||    
T  40753958 aattttttttaaggcaacatctagctgattgtt-taaaaacagttcaaactaaatcaa 40753902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 40753883 - 40753830
Alignment:
Q  241 ctaaatcaagaatataacgcttttttattgtatggaaatgatataatgctttattttta 299  Q
    ||||||||||||||||| ||||||     ||||||||||||||||||||||||| ||||    
T  40753883 ctaaatcaagaatataatgctttt-----gtatggaaatgatataatgctttatcttta 40753830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 41479473 - 41479424
Alignment:
Q  330 ttcaagacaaaaatttaaaccagactgcaaaagggagacaattgataccac 380  Q
    |||||||||||||||||||||| ||| | |||| |||||||||||||||||    
T  41479473 ttcaagacaaaaatttaaaccaaactac-aaagagagacaattgataccac 41479424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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