View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9032_low_2 (Length: 586)
Name: NF9032_low_2
Description: NF9032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9032_low_2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 544; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 16 - 571
Target Start/End: Complemental strand, 41486602 - 41486047
Alignment:
| Q |
16 |
acaaaagggagacaattgataccacctactcgtcgtgattaattttcaacataaatttcaataatcaacaaattccaaaaaacttcaactcctttcaaag |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41486602 |
acaaaagggagacaattgataccacctactcgtcgtgattaattttcaacataaatttcaataatcaacaatttccaaaaaacttcaactcctttcaaag |
41486503 |
T |
|
| Q |
116 |
ttttaaaacaaaagtcatacacattatctgctaaaagagtactcctacatgataagtaactatatataacaaccatacgaagtatcacaaggcactaacc |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41486502 |
ttttaacacaaaagtcatacacattatctgctaaaagagtactcctacatgataagtaactatatataacaaccatacgaagtatcacaaggcactaacc |
41486403 |
T |
|
| Q |
216 |
attggcataatgtactaaagtctgttagagctagaatttcaactaagtatcctgcatatatataagtctaattctaagctcttaccgcccaaatgaagcc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41486402 |
attggcataatgtactaaagtctgttagagctagaatttcaactaagtatcctgcatatatataagtctaattctaagctcttaccgcccaaatgaagcc |
41486303 |
T |
|
| Q |
316 |
tcaataagctttctttcccttatttaatctccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccagagt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41486302 |
tcaataagctttctttcccttatttaatctccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccagagt |
41486203 |
T |
|
| Q |
416 |
tctggtattgggtatctaccactagggttgtactcatttaactccttcagagctgtagctactgcatcttgcacctcatccccaaactcatccttcaaac |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41486202 |
tctggtattgggtatctaccactagggttgtactcatttaactccttcagagctgtagctactgcatcatgcacctcatccccaaactcatccttcaaac |
41486103 |
T |
|
| Q |
516 |
ttttcagctttttatcttctccatctaaaatttcctgtgtgatatatcttacatat |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41486102 |
ttttcagctttttatcttctccatctaaaatttcctgtgtgatatatcttacatat |
41486047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 265 - 571
Target Start/End: Complemental strand, 40753482 - 40753177
Alignment:
| Q |
265 |
tcctgcatatatataagtctaattctaagctcttaccgcccaaatgaagcctcaataagctttctttcccttatttaatctccattgcttaattaaatgg |
364 |
Q |
| |
|
|||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||| || ||||| ||||| ||||||| |
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|
| T |
40753482 |
tcctgcatatgtataagtctagttccaagttcttaccgcccaaatgaagcctcaataagttttctttcccttgtttgatttccatatcttaactaaatgg |
40753383 |
T |
|
| Q |
365 |
gaaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctaccactagggttgtactcatttaactccttca |
464 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||| |||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
40753382 |
gaaactccctccttcaacgaagccttccttccttccttaaaattccagagttccggtactgggtacctaccactagggttgtactcatttaactccttca |
40753283 |
T |
|
| Q |
465 |
gagctgtagctactgcatcttgcacctcatccccaaactcatccttcaaacttttcagctttttatcttctccatctaaaatttcctgtgtgatatatct |
564 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40753282 |
gagctgtagctactgcatcatgcaccttatcccc-aactcatccttcaaacttttcagcttttcatcttctccatctaaaatttcctgtgtgatatatct |
40753184 |
T |
|
| Q |
565 |
tacatat |
571 |
Q |
| |
|
|||||| |
|
|
| T |
40753183 |
aacatat |
40753177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 226 - 571
Target Start/End: Complemental strand, 41472264 - 41471921
Alignment:
| Q |
226 |
tgtactaaagtctgttagagctagaatttcaactaagtatcctgcatatatataagtctaattctaagctcttaccgcccaaatgaagcctcaataagct |
325 |
Q |
| |
|
||||| |||||||||||||| |||||||| || ||| | | || ||||||||| |||| |||||| ||||||||||||||||||||||||||||| | |
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|
| T |
41472264 |
tgtaccaaagtctgttagagttagaatttaaattaaatttttggc--atatataagcctaactctaagttcttaccgcccaaatgaagcctcaataagtt |
41472167 |
T |
|
| Q |
326 |
ttctttcccttatttaatctccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattg |
425 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
41472166 |
ttctttcccttatttaatatccattgcctaattaaatgggaaacaccctccttcaacgtggccttccttccttccctaaaattccagagttccggtattg |
41472067 |
T |
|
| Q |
426 |
ggtatctaccactagggttgtactcatttaactccttcagagctgtagctactgcatcttgcacctcatccccaaactcatccttcaaacttttcagctt |
525 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
41472066 |
ggtacctaccactagggttgcactcgtttaactccttcagagctgtagctactgcatcatgcacctcatccccgaactcatccttcaaactttttagctt |
41471967 |
T |
|
| Q |
526 |
tttatcttctccatctaaaatttcctgtgtgatatatcttacatat |
571 |
Q |
| |
|
|| ||||||||| |||||||||||||| ||| ||||| | |||||| |
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|
| T |
41471966 |
ttcatcttctccgtctaaaatttcctgcgtggtatatgtaacatat |
41471921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 278 - 571
Target Start/End: Complemental strand, 41479215 - 41478922
Alignment:
| Q |
278 |
taagtctaattctaagctcttaccgcccaaatgaagcctcaataagctttctttcccttatttaatctccattgcttaattaaatgggaaacaccttcct |
377 |
Q |
| |
|
|||||||||||||| | || |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |
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|
| T |
41479215 |
taagtctaattctatgttcataccacccaaatgaagcctcaataagttttctttcccttatttaatttccattgcctaattaaatgggaaacaccctcct |
41479116 |
T |
|
| Q |
378 |
tcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctaccactagggttgtactcatttaactccttcagagctgtagctac |
477 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
41479115 |
tcaatgtggccttccttccttccctaaaattccagagttccggtattgggtacctaccactagggttgcactcgtttaactccttcagagctgtagctac |
41479016 |
T |
|
| Q |
478 |
tgcatcttgcacctcatccccaaactcatccttcaaacttttcagctttttatcttctccatctaaaatttcctgtgtgatatatcttacatat |
571 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||| |||||||||| ||| ||||| | |||||| |
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|
| T |
41479015 |
tgcatcatgcacctcatccccgaactcatccttcaaactttttagcttttcatcttctccgtctgaaatttcctgcgtggtatatgtaacatat |
41478922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 41487462 - 41487294
Alignment:
| Q |
23 |
ggagacaattgataccacctactcgtcgtgattaattttcaacataaatttcaataatcaacaaattccaaaaaacttcaactcctttcaaagttttaaa |
122 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||| |||| |||||| |||| | |||||||||| ||| ||||||||||||||| || |||||||||||| |
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|
| T |
41487462 |
ggagacgattgataccaccaactcgtctcgattactttttaacatatattttagtaatcaacaatttc-aaaaaacttcaactcgttacaaagttttaaa |
41487364 |
T |
|
| Q |
123 |
acaaaagtcatacacattatctgctaaaagagtactcctacatgataagtaactatatataacaaccata |
192 |
Q |
| |
|
| |||||| | ||||||||||||||| ||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
41487363 |
ccttaagtcacaagcattatctgctaaaaaagtgctcctacatgataagtaatgatatataacaaccata |
41487294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 3e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 226 - 571
Target Start/End: Original strand, 16407135 - 16407478
Alignment:
| Q |
226 |
tgtactaaagtctgttagagctagaatttcaactaagtatcctgcatatatataagtctaattctaagctcttaccgcccaaatgaagcctcaataagct |
325 |
Q |
| |
|
||||| |||||||||||||||| |||||| || ||| | ||| ||||||||| || ||| |||||| | ||||||||||||||| ||||||||||| | |
|
|
| T |
16407135 |
tgtacaaaagtctgttagagctcgaatttaaattaaatttccggcatatata--agcgtaactctaagttattaccgcccaaatgatgcctcaataagtt |
16407232 |
T |
|
| Q |
326 |
ttctttcccttatttaatctccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattg |
425 |
Q |
| |
|
|||||||| ||| || | |||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
16407233 |
ttctttcctttacttgctttccatttattaattaaatgcgaaacaccttccttcaacgaagccttccttccttccttaaaattccagagttccggtattg |
16407332 |
T |
|
| Q |
426 |
ggtatctaccactagggttgtactcatttaactccttcagagctgtagctactgcatcttgcacctcatccccaaactcatccttcaaacttttcagctt |
525 |
Q |
| |
|
| | || |||||||| |||||||||||||||||||||||||| |||| ||||||||| ||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16407333 |
gattcctgccactaggattgtactcatttaactccttcagagccgtagatactgcatcatgcgcctcatccccaacctcatccttcaaacttttcagctt |
16407432 |
T |
|
| Q |
526 |
tttatcttctccatctaaaatttcctgtgtgatatatcttacatat |
571 |
Q |
| |
|
|| ||||||||| |||||||||||||| ||||||||||| |||||| |
|
|
| T |
16407433 |
ttcatcttctccgtctaaaatttcctgcgtgatatatctaacatat |
16407478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 345 - 554
Target Start/End: Complemental strand, 52482385 - 52482176
Alignment:
| Q |
345 |
tccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctaccactagggtt |
444 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||||| |||||| |||||||| || |
|
|
| T |
52482385 |
tccattgcctaattaaatgtgaaacaccctccttcaccgtagccttccttccttccttaaaattccagagttcaagtattgagtatcttccactaggatt |
52482286 |
T |
|
| Q |
445 |
gtactcatttaactccttcagagctgtagctactgcatcttgcacctcatccccaaactcatccttcaaacttttcagctttttatcttctccatctaaa |
544 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| ||||||| |||||| || |||||||| ||||||||||| |||| ||||||||| |||||| |
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|
| T |
52482285 |
gtactcatttaactcctttagagctgtaactactgcatcatgcaccttatccccgaattcatcctttaaacttttcagtttttcatcttctccgtctaaa |
52482186 |
T |
|
| Q |
545 |
atttcctgtg |
554 |
Q |
| |
|
|||||||||| |
|
|
| T |
52482185 |
atttcctgtg |
52482176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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