View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9032_low_21 (Length: 249)
Name: NF9032_low_21
Description: NF9032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9032_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5867283 - 5867521
Alignment:
| Q |
1 |
ccaaatttctttgacaagctagtgaatcttgtagcacttgatctatcatataatatgctcagtggctcaataccttcaacattgggacaagatcatggcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5867283 |
ccaaatttctttgacaagctagtgaatcttgtagcacttgatctatcatataatatgctcagtggctcaataccttcaacattgggacaagatcatggcc |
5867382 |
T |
|
| Q |
101 |
aaaatagtttgaaagaattgcgtctttctattaatcgactaaacgggtcattggaaagaagcatttaccagttatcaaatttggttgtgttgaatttagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5867383 |
aaaatagtttgaaagaattgcgtctttctattaatcaactaaacgggtcattggaaagaagcatttaccagttatcaaatttggttgtgttgaatttagc |
5867482 |
T |
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| Q |
201 |
tgtaaacaatatggagggaattatcagtgatgtccatct |
239 |
Q |
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| T |
5867483 |
tgtaaacaatatggagggaattatcagtgatgttcatct |
5867521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 36966049 - 36965811
Alignment:
| Q |
1 |
ccaaatttctttgacaagctagtgaatcttgtagcacttgatctatcatataatatgctcagtggctcaataccttcaacattgggacaagatcatggcc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36966049 |
ccaaatttctttgactggctagtgaatcttgtagcacttgatctatcatataatatgctcagtggctcaataccttccacattgggacaagatcatggcc |
36965950 |
T |
|
| Q |
101 |
aaaatagtttgaaagaattgcgtctttctattaatcgactaaacgggtcattggaaagaagcatttaccagttatcaaatttggttgtgttgaatttagc |
200 |
Q |
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| T |
36965949 |
taaataatttgaaagaattgcatctttctattaatcaactaaacggatcattggaaagaagcattcaccagttatcaagtttggttgtgttgaacttagc |
36965850 |
T |
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| Q |
201 |
tgtaaacaatatggagggaattatcagtgatgtccatct |
239 |
Q |
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| T |
36965849 |
tgtaaacaatatggagggaattatcagtgatgttcatct |
36965811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 36977788 - 36977556
Alignment:
| Q |
1 |
ccaaatttctttgacaagctagtgaatcttgtagcacttgatctatcatataatatgctcagtggctcaataccttcaacattgggacaagatcatggcc |
100 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36977788 |
ccaaatttctttgactggctagtgaatcttgtagcacttgatctatcatataatatgctcagtggctcaataccttccacattgggacaagatcatggcc |
36977689 |
T |
|
| Q |
101 |
aaaatagtttgaaagaattgcgtctttctattaatcgactaaacgggtcattggaaagaagcatttaccagttatcaaatttggttgtgttgaatttagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||| |
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| T |
36977688 |
taaatagtttgaaagaattgcgtctttctattaatcaactaaacggatcattggaaagaagcattcaccagttatcaaatttggttgtgttggacttagc |
36977589 |
T |
|
| Q |
201 |
tgtaaacaatatggagggaattatcagtgatgt |
233 |
Q |
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|| |||| ||||||||||||||||||||||||| |
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| T |
36977588 |
tggaaacgatatggagggaattatcagtgatgt |
36977556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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