View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9032_low_5 (Length: 497)
Name: NF9032_low_5
Description: NF9032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9032_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Original strand, 40650532 - 40650999
Alignment:
| Q |
17 |
acatacagtgtattcccattctataagtttttcgagagtggcttcttcaagtttttcttcaaagatgcacattaaatatcctacagaaaacaaaaacaat |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40650532 |
acatacagtgtattcccattctataagtttctcgagagtggcttcttcaagtttttcttcaaagatgcacattaaatatcctacagaaaacaaaaacaat |
40650631 |
T |
|
| Q |
117 |
atgcaatgataaaatctcaagtgctgtaaacagtgaccatgtaatcaagcctgcaacaatcatggtgccatgggaattacctattttctggacacaaata |
216 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40650632 |
atgcaatgataaaatctcaagtgctgtaaacagtcaccatgtaatcaagcctgcaacaatcatggtgccatgggaattacctattttctgggcacaaata |
40650731 |
T |
|
| Q |
217 |
ttattcagagtcagaattacctatttgctgtatataaacaatacagggaacaagcttgttcttgcatagatcagggagttgtgcaagttccaacgatgaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40650732 |
ttattcagagtcagaattacctatttgctgtatataaacaatacagggaacaagcttgttcttgcatagatcagggagttgtgcaagttccaacgatgaa |
40650831 |
T |
|
| Q |
317 |
acctgcaaaaaatgcatcacgataaatacacacagcatatttgttttaatgaattagaatttagagttttcatcaaagctacctcttccaggaattctgg |
416 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40650832 |
acctgcaaaaaatgtatcacgatgaatacacacagcatatttgttttaatgaattagaatttagagttttcatcaaagctacctcttccaggaattctgg |
40650931 |
T |
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| Q |
417 |
caattcctcatatatttgccttagctcatccaacttagaataatcaatttatcaaaagtccaaaagta |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40650932 |
caattcctcatatatttgccttagctcatccaacttagaataaccaatttatcaaaagtccaaaagta |
40650999 |
T |
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