View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9033_low_1 (Length: 690)

Name: NF9033_low_1
Description: NF9033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9033_low_1
NF9033_low_1
[»] chr5 (6 HSPs)
chr5 (41-670)||(35042333-35042967)
chr5 (600-670)||(19389710-19389780)
chr5 (586-670)||(9684659-9684743)
chr5 (609-670)||(28523747-28523808)
chr5 (570-662)||(7398633-7398725)
chr5 (609-653)||(43496636-43496680)
[»] chr8 (4 HSPs)
chr8 (593-670)||(3394090-3394167)
chr8 (600-670)||(37388408-37388478)
chr8 (586-670)||(40984944-40985026)
chr8 (600-633)||(4429589-4429622)
[»] chr4 (4 HSPs)
chr4 (560-668)||(9021065-9021173)
chr4 (601-670)||(15451220-15451289)
chr4 (600-670)||(24662629-24662699)
chr4 (600-670)||(42759534-42759603)
[»] chr7 (5 HSPs)
chr7 (559-670)||(36907412-36907523)
chr7 (577-668)||(14676361-14676452)
chr7 (571-670)||(36845293-36845393)
chr7 (559-670)||(23465841-23465952)
chr7 (492-537)||(36844554-36844599)
[»] chr6 (2 HSPs)
chr6 (572-661)||(34557027-34557116)
chr6 (561-662)||(16329516-16329616)
[»] chr3 (4 HSPs)
chr3 (601-670)||(4247246-4247315)
chr3 (559-633)||(32858995-32859069)
chr3 (600-670)||(23568192-23568262)
chr3 (608-664)||(1132825-1132881)
[»] chr1 (4 HSPs)
chr1 (570-670)||(17416570-17416670)
chr1 (599-661)||(50162276-50162338)
chr1 (601-670)||(30543246-30543315)
chr1 (591-631)||(15426195-15426235)
[»] scaffold1763 (1 HSPs)
scaffold1763 (600-670)||(486-556)
[»] chr2 (1 HSPs)
chr2 (601-670)||(30265242-30265311)


Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 41 - 670
Target Start/End: Complemental strand, 35042967 - 35042333
Alignment:
Q  41 aaactagttattattttcaaagagaatgtacttaacgaagaagcaatatatatttttgagaaaactggagagtgaagacttcagaatagagaaagcaagt 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  35042967 aaactagttattattttcaaagagaatgtacttaacgaagaagcaatatatatttttgagaaaactggagagtgaagacttcagaataacgaaagcaagt 35042868  T
Q  141 aaagacacgaggacaagtcttaggaatcaccaacatacaagacatgaacatgaaagatctaaaatgaggcagtggcgaaaattcattcgaaaagaggcac 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35042867 aaagacacgaggacaagtcttaggaatcaccaacatacaagacatgaacatgaaagatctaaaatgaggcagtggcgaaaattcattcgaaaagaggcac 35042768  T
Q  241 tcaggcatatagacaagaaaaagaagcgggaaaaacgcacatttgagtcacaagtcacaatccctcaaaacaaagaactaagaaccacatgtaggatcca 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||||| ||||||||||||||||||    
T  35042767 tcaggcatatagacaagaaaaagaagcgggaaaaacgcacatttgagtc-------acaatccctcaaaacaatgaactaaaaaccacatgtaggatcca 35042675  T
Q  341 agaatccaagttattcatgaagcactaccacatgtcgtatcagacattccatcctcattaaatgctcactagtaagtgacgcaaaatgctataaaaatga 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35042674 agaatccaagttattcatgaagcactaccacatgtcgtatcagacattccatcctcattaaatgctcactagtaagtgacgccaaatgctataaaaatga 35042575  T
Q  441 caacttagaggacacaattgtcaattgcaatcatcaagaacacattccaaatactctgagaacaaggacaagattaaatgtcatttcaactcttcataga 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  35042574 caacttagaggacacaattgtcaattgcaatcatcaagaacacattccaaatactttgagaacaaggacaagattaaatatcatttcaactcttcataga 35042475  T
Q  541 tctactaagactttgttt------------gggagaggaaggaaagattttggagaattgggaatacaggagaaaatggtaaaatctttcatattttttg 628  Q
     ||||||||| ||||| |            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35042474 actactaagattttgtctgggagtttggaagggagagtaaggaaagattttggagaattgggaatacaggagaaaatggtaaaatctttcatattttttg 35042375  T
Q  629 aaagataaactttttggacaatgataatttaatgtttatgat 670  Q
    ||||||||| ||||| || |||||||| ||||||||||||||    
T  35042374 aaagataaattttttagagaatgataaattaatgtttatgat 35042333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 670
Target Start/End: Original strand, 19389710 - 19389780
Alignment:
Q  600 gaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatgat 670  Q
    |||||||||||||||||||| | |||||||||||| || ||||| || |||||||| |||||| |||||||    
T  19389710 gaaaatggtaaaatctttcacaatttttgaaagattaattttttagagaatgataaattaatgcttatgat 19389780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 670
Target Start/End: Original strand, 9684659 - 9684743
Alignment:
Q  586 ttgggaatacaggagaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatgat 670  Q
    |||| |||| ||| |||||||| |||||||| || |||||||||||||  || ||||| || |||||||| |||||| |||||||    
T  9684659 ttggaaatataggggaaaatgggaaaatcttccacattttttgaaagagtaattttttagaaaatgataaattaatgcttatgat 9684743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 609 - 670
Target Start/End: Complemental strand, 28523808 - 28523747
Alignment:
Q  609 aaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatgat 670  Q
    |||||||||||||||||||||||||   | |||||  | |||||||| ||||||||||||||    
T  28523808 aaaatctttcatattttttgaaagaatgattttttaaagaatgataaattaatgtttatgat 28523747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 570 - 662
Target Start/End: Original strand, 7398633 - 7398725
Alignment:
Q  570 gaaagattttggagaattgggaatacaggagaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatg 662  Q
    |||||| |||| ||| |||| |||| |||||||||||||||||   |||| |||||||| ||||  || ||||| || |||||||| ||||||    
T  7398633 gaaagactttgaagagttggaaatataggagaaaatggtaaaaaaattcacattttttgtaagactaattttttagagaatgataaattaatg 7398725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 609 - 653
Target Start/End: Complemental strand, 43496680 - 43496636
Alignment:
Q  609 aaaatctttcatattttttgaaagataaactttttggacaatgat 653  Q
    |||||||||||||||||||||||||  || |||||||| ||||||    
T  43496680 aaaatctttcatattttttgaaagagcaattttttggagaatgat 43496636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 593 - 670
Target Start/End: Complemental strand, 3394167 - 3394090
Alignment:
Q  593 tacaggagaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatgat 670  Q
    |||||||||||||||||||||||| || |||||||||||||  || ||||  || |||||||| ||||||||||||||    
T  3394167 tacaggagaaaatggtaaaatcttgcacattttttgaaagagtaatttttaagagaatgataaattaatgtttatgat 3394090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 670
Target Start/End: Complemental strand, 37388478 - 37388408
Alignment:
Q  600 gaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatgat 670  Q
    |||||||||||||||||||| |||||||||||||  || ||||| || |||||||| |||| |||||||||    
T  37388478 gaaaatggtaaaatctttcacattttttgaaagagtaaatttttagagaatgataaattaaagtttatgat 37388408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 586 - 670
Target Start/End: Original strand, 40984944 - 40985026
Alignment:
Q  586 ttgggaatacaggagaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatgat 670  Q
    ||||||||| ||| |||| |  |||||||||||||||||||||||||   || ||||| || |||||||| ||||||||||||||    
T  40984944 ttgggaatataggggaaagtattaaaatctttcatattttttgaaag--taattttttagagaatgataaattaatgtttatgat 40985026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 600 - 633
Target Start/End: Complemental strand, 4429622 - 4429589
Alignment:
Q  600 gaaaatggtaaaatctttcatattttttgaaaga 633  Q
    |||||||||||||||||||| |||||||||||||    
T  4429622 gaaaatggtaaaatctttcacattttttgaaaga 4429589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 560 - 668
Target Start/End: Complemental strand, 9021173 - 9021065
Alignment:
Q  560 ggagaggaaggaaagattttggagaattgggaatacaggagaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataattta 659  Q
    ||||||||||| |||| |||| ||  |||| |||| ||| |||||||||||||||||||| ||||||| |||||| || ||||| ||  ||||||| |||    
T  9021173 ggagaggaagggaagactttgaagggttggaaatataggggaaaatggtaaaatctttcacattttttaaaagattaattttttagagtatgataaatta 9021074  T
Q  660 atgtttatg 668  Q
    ||| |||||    
T  9021073 atgcttatg 9021065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 601 - 670
Target Start/End: Original strand, 15451220 - 15451289
Alignment:
Q  601 aaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatgat 670  Q
    ||||||||||||||||||| |||||||||||||  || |||||  | |||||||| |||||| |||||||    
T  15451220 aaaatggtaaaatctttcacattttttgaaagagtaattttttaaataatgataaattaatgcttatgat 15451289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 600 - 670
Target Start/End: Original strand, 24662629 - 24662699
Alignment:
Q  600 gaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatgat 670  Q
    |||||||||||||||||||| ||||| |||||||  || ||||| || |||||||| | |||| |||||||    
T  24662629 gaaaatggtaaaatctttcacattttctgaaagagtaattttttagagaatgataaatcaatgcttatgat 24662699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 600 - 670
Target Start/End: Original strand, 42759534 - 42759603
Alignment:
Q  600 gaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatgat 670  Q
    |||||| ||||||||||||| |||||||||||||  || ||||| || |||||||| |||| |||||||||    
T  42759534 gaaaattgtaaaatctttcacattttttgaaagagtaaatttttagagaatgataa-ttaacgtttatgat 42759603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 559 - 670
Target Start/End: Complemental strand, 36907523 - 36907412
Alignment:
Q  559 gggagaggaaggaaagattttggagaattgggaatacaggagaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataattt 658  Q
    ||||| |||| |||||| |||||||  |||  |||| ||||||||| |||||||||||||| ||||||| ||| |  || ||||| || |||||||| ||    
T  36907523 gggaggggaatgaaagactttggagggttgaaaatataggagaaaaaggtaaaatctttcacattttttaaaatactaattttttagataatgataaatt 36907424  T
Q  659 aatgtttatgat 670  Q
    ||||||||||||    
T  36907423 aatgtttatgat 36907412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 577 - 668
Target Start/End: Complemental strand, 14676452 - 14676361
Alignment:
Q  577 tttggagaattgggaatacaggagaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatg 668  Q
    |||||||| |||| |||| ||| ||||||||| |||||||||| |||||||||||||  || ||||| |  |||||||| |||||| |||||    
T  14676452 tttggagatttggaaatataggggaaaatggtcaaatctttcacattttttgaaagagtaattttttagggaatgataaattaatgcttatg 14676361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 670
Target Start/End: Original strand, 36845293 - 36845393
Alignment:
Q  571 aaagattttggagaattgggaatacaggagaaaatggtaaaa-tctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatga 669  Q
    ||||| |||||||| || | |||| ||| ||||||||||||| | ||||| ||||||||||||| ||||||||| || |||| ||| |||||  ||||||    
T  36845293 aaagactttggagagtttgaaataaaggggaaaatggtaaaaatatttcacattttttgaaagagaaactttttagagaatgttaaattaatacttatga 36845392  T
Q  670 t 670  Q
    |    
T  36845393 t 36845393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 670
Target Start/End: Original strand, 23465841 - 23465952
Alignment:
Q  559 gggagaggaaggaaagattttggagaattgggaatacaggagaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataattt 658  Q
    ||||| |||||| |||| |||| ||  |||| |||| ||| |||||||||||||||||||| ||||||| |||||  |  ||||| || |||||||| ||    
T  23465841 gggaggggaagggaagactttgaagggttggaaatataggggaaaatggtaaaatctttcacattttttaaaagaatagttttttagagaatgataaatt 23465940  T
Q  659 aatgtttatgat 670  Q
    |||  |||||||    
T  23465941 aattcttatgat 23465952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 537
Target Start/End: Original strand, 36844554 - 36844599
Alignment:
Q  492 tactctgagaacaaggacaagattaaatgtcatttcaactcttcat 537  Q
    |||| ||||||||||| ||||||||||| | |||||||||||||||    
T  36844554 tactttgagaacaagggcaagattaaatataatttcaactcttcat 36844599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 572 - 661
Target Start/End: Original strand, 34557027 - 34557116
Alignment:
Q  572 aagattttggagaattgggaatacaggagaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaat 661  Q
    |||| |||||||| |||| |||| |||||||||||||||||||||||| ||  |||||||||  |||||||| || |||| ||| |||||    
T  34557027 aagactttggagagttggaaatataggagaaaatggtaaaatctttcacatagtttgaaagaataactttttagagaatggtaaattaat 34557116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 662
Target Start/End: Complemental strand, 16329616 - 16329516
Alignment:
Q  561 gagaggaaggaaagattttggagaattgggaatacaggagaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaa 660  Q
    ||||||||| ||||| |||| ||  |||| |||| ||||||||||| |||||||||| | |||||||||||||  || ||||| || |||||||| ||||    
T  16329616 gagaggaag-aaagactttgaagggttggaaatataggagaaaatgataaaatcttttacattttttgaaagaataattttttagagaatgataaattaa 16329518  T
Q  661 tg 662  Q
    ||    
T  16329517 tg 16329516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 601 - 670
Target Start/End: Complemental strand, 4247315 - 4247246
Alignment:
Q  601 aaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatgat 670  Q
    ||||||||||||||||||||||||||| |||||  || ||||| || |||||||| |||||| |||||||    
T  4247315 aaaatggtaaaatctttcatatttttttaaagagtaattttttagagaatgataaattaatgcttatgat 4247246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 559 - 633
Target Start/End: Complemental strand, 32859069 - 32858995
Alignment:
Q  559 gggagaggaaggaaagattttggagaattgggaatacaggagaaaatggtaaaatctttcatattttttgaaaga 633  Q
    ||||| |||||| |||  |||||||  |||| |||| ||| |||||||||||||||||||| |||||||||||||    
T  32859069 gggaggggaagggaaggctttggagggttggaaatataggggaaaatggtaaaatctttcacattttttgaaaga 32858995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 600 - 670
Target Start/End: Complemental strand, 23568262 - 23568192
Alignment:
Q  600 gaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatgat 670  Q
    |||||| ||||||||||||  |||||||||||||  ||||||||  | |||||||| |||||| |||||||    
T  23568262 gaaaatagtaaaatctttcgcattttttgaaagaataactttttttagaatgataaattaatgattatgat 23568192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 608 - 664
Target Start/End: Original strand, 1132825 - 1132881
Alignment:
Q  608 taaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtt 664  Q
    |||||||||||| |||||||||||||  || ||||| || |||||||| ||||||||    
T  1132825 taaaatctttcacattttttgaaagagtaattttttagagaatgataaattaatgtt 1132881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 570 - 670
Target Start/End: Original strand, 17416570 - 17416670
Alignment:
Q  570 gaaagattttggagaattgggaatacaggagaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatga 669  Q
    |||| |||||||||  |||| |||| |||||||||||||| ||||||||| | |||||| ||||  || ||||| || | |||||| |||||||||||||    
T  17416570 gaaatattttggagggttggaaatataggagaaaatggtacaatctttcacagtttttgtaagagtaattttttagagattgataaattaatgtttatga 17416669  T
Q  670 t 670  Q
    |    
T  17416670 t 17416670  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 599 - 661
Target Start/End: Complemental strand, 50162338 - 50162276
Alignment:
Q  599 agaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaat 661  Q
    |||||||  |||||||||||||||||||||||||| ||| ||||| || ||||| || |||||    
T  50162338 agaaaataataaaatctttcatattttttgaaagagaaattttttagagaatgaaaaattaat 50162276  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 601 - 670
Target Start/End: Original strand, 30543246 - 30543315
Alignment:
Q  601 aaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatgat 670  Q
    ||||||||||||||||| | |||||||||||||  || ||||| || |||||||| |||||  |||||||    
T  30543246 aaaatggtaaaatcttttacattttttgaaagaataattttttagagaatgataaattaatacttatgat 30543315  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 591 - 631
Target Start/End: Original strand, 15426195 - 15426235
Alignment:
Q  591 aatacaggagaaaatggtaaaatctttcatattttttgaaa 631  Q
    |||| ||| |||||||||||||||||||| |||||||||||    
T  15426195 aatataggggaaaatggtaaaatctttcacattttttgaaa 15426235  T

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Target: scaffold1763 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 600 - 670
Target Start/End: Original strand, 486 - 556
Alignment:
Q  600 gaaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatgat 670  Q
    |||||||||||||| ||||| |||||||||||||  || ||||| || |||| ||| ||||||||||||||    
T  486 gaaaatggtaaaatatttcacattttttgaaagagtaaatttttagagaatgttaaattaatgtttatgat 556  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 601 - 670
Target Start/End: Original strand, 30265242 - 30265311
Alignment:
Q  601 aaaatggtaaaatctttcatattttttgaaagataaactttttggacaatgataatttaatgtttatgat 670  Q
    ||||| ||||||||||| |||||||||||||||  || ||||| || ||| |||| |||||| |||||||    
T  30265242 aaaatagtaaaatcttttatattttttgaaagagtaattttttagagaataataaattaatgcttatgat 30265311  T

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