View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9033_low_11 (Length: 284)
Name: NF9033_low_11
Description: NF9033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9033_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 9194487 - 9194220
Alignment:
| Q |
1 |
gatctaaatttgagtttgattctgacgaggatgtttggaacatagatttagcttggtgtacgagattccaattttgttggatattgtcataagaacccat |
100 |
Q |
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| T |
9194487 |
gatctaaatttgagtttgattctgacgaggatgtttggaacatagatttagcttggtgcacgaggttccaattttgttggatattgtcataagaacccat |
9194388 |
T |
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| Q |
101 |
ttcgattacaccgttagttgtcggaatacaaatcaatgtttcaattccatgcacgtgtgcttcattggatctttcacagttatagatttgaagttcatgt |
200 |
Q |
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| T |
9194387 |
ttcgattacaccgttagttgtcggaatacaaatcagtgtttcgattccatgcatgtgtgcttcattggatctctcacaattatagatttgaagttcatgt |
9194288 |
T |
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| Q |
201 |
ttactattcaaccaaagaacagaatctaaagcaaaagctttaccaggtaatgaaattgaagaagcatt |
268 |
Q |
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| T |
9194287 |
ttactattcaaccaaagaacagaatctaaagcaaaagctttaccaggtaatgaaattgaagaagcatt |
9194220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 9213550 - 9213807
Alignment:
| Q |
11 |
tgagtttgattctgacgaggatgtttggaacatagatttagcttggtgtacgagattccaattttgttggatattgtcataagaacccatttcgattaca |
110 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
9213550 |
tgagttagattctgacgaggatgtttggaacatagatttagcttggtgtactaggttccaattttgttggatattatcgtaagaacccatttcgattaca |
9213649 |
T |
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| Q |
111 |
ccgttagttgtcggaatacaaatcaatgtttcaattccatgcacgtgtgcttcattggatctttcacagttatagatttgaagttcatgtttactattca |
210 |
Q |
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| T |
9213650 |
ccgttagttgtcggaatacaaatcaatgtttcaattccatgcacgtgtgcttcattggatctttcacagttatagatttgcagttcatgtttactattca |
9213749 |
T |
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| Q |
211 |
accaaagaacagaatctaaagcaaaagctttaccaggtaatgaaattgaagaagcatt |
268 |
Q |
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| T |
9213750 |
accaaagaacagaatctaaagcaaaagatttaccaggtaatgaaattgaagaagcatt |
9213807 |
T |
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