View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9033_low_12 (Length: 262)

Name: NF9033_low_12
Description: NF9033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9033_low_12
NF9033_low_12
[»] chr5 (3 HSPs)
chr5 (14-248)||(40000336-40000570)
chr5 (36-91)||(32766872-32766927)
chr5 (36-90)||(6401573-6401627)
[»] chr7 (6 HSPs)
chr7 (36-91)||(29763129-29763184)
chr7 (41-91)||(30813866-30813916)
chr7 (36-93)||(5409769-5409826)
chr7 (62-91)||(23859895-23859924)
chr7 (26-91)||(25822720-25822785)
chr7 (59-95)||(35862038-35862074)
[»] chr1 (8 HSPs)
chr1 (36-93)||(25934691-25934748)
chr1 (36-91)||(47989572-47989627)
chr1 (29-95)||(9828112-9828178)
chr1 (26-91)||(17408756-17408821)
chr1 (59-92)||(31694638-31694671)
chr1 (59-91)||(2218315-2218347)
chr1 (36-92)||(6427539-6427595)
chr1 (59-91)||(16812643-16812675)
[»] chr8 (2 HSPs)
chr8 (59-91)||(26902104-26902136)
chr8 (37-93)||(22197669-22197725)
[»] chr4 (4 HSPs)
chr4 (29-93)||(24613628-24613692)
chr4 (59-94)||(11596294-11596329)
chr4 (42-93)||(18513173-18513224)
chr4 (38-91)||(18966575-18966628)
[»] chr3 (2 HSPs)
chr3 (41-91)||(11610578-11610628)
chr3 (59-88)||(15544771-15544800)
[»] scaffold0086 (1 HSPs)
scaffold0086 (26-91)||(2993-3058)
[»] chr6 (4 HSPs)
chr6 (59-92)||(426477-426510)
chr6 (36-93)||(17327588-17327645)
chr6 (29-93)||(18367904-18367968)
chr6 (43-91)||(32511606-32511654)
[»] chr2 (3 HSPs)
chr2 (59-91)||(11223793-11223825)
chr2 (59-91)||(35056966-35056998)
chr2 (59-91)||(44635580-44635612)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 40000570 - 40000336
Alignment:
Q  14 tcacataatttagtatcagacgcgacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcataggtctgtaacaatatnnnnnnnn 113  Q
    |||||||||| ||| ||  |||||||| ||| |||||| |   | ||| ||||||||||||||||||||||||||||||| |||||||||||            
T  40000570 tcacataattcagtgtcgtacgcgacatgtgcctgacaccgagacacgtcttatctgaggagtgtccgtgcttcataggtatgtaacaatataaaaaaat 40000471  T
Q  114 nnnnnnnnnnnngcatgcaactagcgggtgaagaatattcacacttgtccgtgtagatgaaggaaagagtattatttcccaacctgtttaacttaatgtt 213  Q
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40000470 tgaaaaacaaaagcatgcaactagcaggtgaagaatattcacacttgtccgtgtagatgaaggaaagagtattatttcccaacctgtttaacttaatgtt 40000371  T
Q  214 cagcacatgaactgaccaaagtcttttaatctgtg 248  Q
    |||||||||||||||||||||||||||||||||||    
T  40000370 cagcacatgaactgaccaaagtcttttaatctgtg 40000336  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 32766927 - 32766872
Alignment:
Q  36 cgacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcatag 91  Q
    ||||||||||| |||| ||| ||||| || ||||||||||||||||||||||||||    
T  32766927 cgacacgtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttcatag 32766872  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 6401573 - 6401627
Alignment:
Q  36 cgacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcata 90  Q
    ||||||||||||||||   | ||||||||||||  ||||||||||||||||||||    
T  6401573 cgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcata 6401627  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 29763184 - 29763129
Alignment:
Q  36 cgacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcatag 91  Q
    ||||||||||| |||||||| | |||||| ||| ||||||||||||||||||||||    
T  29763184 cgacacgtgtccgacatcaggacacgcctaatccgaggagtgtccgtgcttcatag 29763129  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 30813866 - 30813916
Alignment:
Q  41 cgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcatag 91  Q
    |||||| |||||||||| |||||| ||| ||||||||||||||||||||||    
T  30813866 cgtgtccgacatcagaacacgcctaatccgaggagtgtccgtgcttcatag 30813916  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 5409826 - 5409769
Alignment:
Q  36 cgacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcataggt 93  Q
    ||||||||||| |||| | | | |||||| ||| ||||||||||||||||||||||||    
T  5409826 cgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggt 5409769  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 91
Target Start/End: Complemental strand, 23859924 - 23859895
Alignment:
Q  62 ccttatctgaggagtgtccgtgcttcatag 91  Q
    ||||||||||||||||||||||||||||||    
T  23859924 ccttatctgaggagtgtccgtgcttcatag 23859895  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 25822720 - 25822785
Alignment:
Q  26 gtatcagacgcgacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcatag 91  Q
    ||||| ||| |||||||||||||||||| | | | |||| |||| ||||||||||||| |||||||    
T  25822720 gtatcggacacgacacgtgtctgacatcgggacatgcctaatctaaggagtgtccgtgtttcatag 25822785  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 35862038 - 35862074
Alignment:
Q  59 acgccttatctgaggagtgtccgtgcttcataggtct 95  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  35862038 acgcctaatccgaggagtgtccgtgcttcataggtct 35862074  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 25934691 - 25934748
Alignment:
Q  36 cgacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcataggt 93  Q
    ||||||||||||||||   | ||||||||||||  |||||||||||||||||||||||    
T  25934691 cgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcataggt 25934748  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 47989572 - 47989627
Alignment:
Q  36 cgacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcatag 91  Q
    |||||| ||||||||||| | | |||||| ||| ||||||||||||||||||||||    
T  47989572 cgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 9828112 - 9828178
Alignment:
Q  29 tcagacgcgacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcataggtct 95  Q
    |||||| ||||||||||| |||| | | | ||| || ||| ||||||||||||||||||||||||||    
T  9828112 tcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcataggtct 9828178  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 17408756 - 17408821
Alignment:
Q  26 gtatcagacgcgacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcatag 91  Q
    ||||||||| ||||||||||| |||| ||  |||| ||| |||||| ||||||| |||||||||||    
T  17408756 gtatcagacacgacacgtgtccgacaccaagatacacctaatctgaagagtgtctgtgcttcatag 17408821  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 31694671 - 31694638
Alignment:
Q  59 acgccttatctgaggagtgtccgtgcttcatagg 92  Q
    |||||| |||||||||||||||||||||||||||    
T  31694671 acgcctaatctgaggagtgtccgtgcttcatagg 31694638  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 2218315 - 2218347
Alignment:
Q  59 acgccttatctgaggagtgtccgtgcttcatag 91  Q
    |||||| ||||||||||||||||||||||||||    
T  2218315 acgcctaatctgaggagtgtccgtgcttcatag 2218347  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 6427539 - 6427595
Alignment:
Q  36 cgacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcatagg 92  Q
    ||||||||||| |||| | | | |||||| |||||| ||||||||||||||||||||    
T  6427539 cgacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcatagg 6427595  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 16812643 - 16812675
Alignment:
Q  59 acgccttatctgaggagtgtccgtgcttcatag 91  Q
    |||||| ||||||||||||||||||||||||||    
T  16812643 acgcctaatctgaggagtgtccgtgcttcatag 16812675  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 26902136 - 26902104
Alignment:
Q  59 acgccttatctgaggagtgtccgtgcttcatag 91  Q
    |||||||||||||||||||||||||||||||||    
T  26902136 acgccttatctgaggagtgtccgtgcttcatag 26902104  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 22197725 - 22197669
Alignment:
Q  37 gacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcataggt 93  Q
    |||||||||| |||| | ||  |||||| ||||||||||||||||||||| ||||||    
T  22197725 gacacgtgtccgacaccggatcacgcctaatctgaggagtgtccgtgctttataggt 22197669  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 24613692 - 24613628
Alignment:
Q  29 tcagacgcgacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcataggt 93  Q
    |||||| |||||||||||||||| ||| | ||| || |||  |||||||||||||||||||||||    
T  24613692 tcagacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttcataggt 24613628  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 94
Target Start/End: Complemental strand, 11596329 - 11596294
Alignment:
Q  59 acgccttatctgaggagtgtccgtgcttcataggtc 94  Q
    |||||| |||||||||||||||||||||||||||||    
T  11596329 acgcctaatctgaggagtgtccgtgcttcataggtc 11596294  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 18513224 - 18513173
Alignment:
Q  42 gtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcataggt 93  Q
    ||||| |||| ||| | |||||| ||||||||||||||||||||||||||||    
T  18513224 gtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcataggt 18513173  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 18966575 - 18966628
Alignment:
Q  38 acacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcatag 91  Q
    ||||||||| |||| | | |||||||| |||| |||||||||||||||||||||    
T  18966575 acacgtgtccgacaacgggatacgcctaatctaaggagtgtccgtgcttcatag 18966628  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 11610578 - 11610628
Alignment:
Q  41 cgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcatag 91  Q
    |||||| |||||| | | |||||| ||||||||||||||||||||||||||    
T  11610578 cgtgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatag 11610628  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 88
Target Start/End: Original strand, 15544771 - 15544800
Alignment:
Q  59 acgccttatctgaggagtgtccgtgcttca 88  Q
    ||||||||||||||||||||||||||||||    
T  15544771 acgccttatctgaggagtgtccgtgcttca 15544800  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 2993 - 3058
Alignment:
Q  26 gtatcagacgcgacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcatag 91  Q
    ||||||||| ||||||||||  |||| | ||| |||||| ||| |||||||||||||||| |||||    
T  2993 gtatcagacacgacacgtgttcgacaccggaacacgcctaatccgaggagtgtccgtgctccatag 3058  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 426510 - 426477
Alignment:
Q  59 acgccttatctgaggagtgtccgtgcttcatagg 92  Q
    |||||| |||||||||||||||||||||||||||    
T  426510 acgcctaatctgaggagtgtccgtgcttcatagg 426477  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 17327645 - 17327588
Alignment:
Q  36 cgacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcataggt 93  Q
    ||||||||||||||||   | | |||||| ||| ||||||||||||||||||||||||    
T  17327645 cgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcataggt 17327588  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 18367904 - 18367968
Alignment:
Q  29 tcagacgcgacacgtgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcataggt 93  Q
    |||||| |||||| |||||||||   | | ||||||||||  |||||||||||||||||||||||    
T  18367904 tcagacacgacacatgtctgacacggggacacgccttatccaaggagtgtccgtgcttcataggt 18367968  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 32511654 - 32511606
Alignment:
Q  43 tgtctgacatcagaatacgccttatctgaggagtgtccgtgcttcatag 91  Q
    ||||||||||| ||  |||||| ||| ||||||||||||||||||||||    
T  32511654 tgtctgacatcggagcacgcctaatcggaggagtgtccgtgcttcatag 32511606  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 11223825 - 11223793
Alignment:
Q  59 acgccttatctgaggagtgtccgtgcttcatag 91  Q
    |||||| ||||||||||||||||||||||||||    
T  11223825 acgcctaatctgaggagtgtccgtgcttcatag 11223793  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 35056966 - 35056998
Alignment:
Q  59 acgccttatctgaggagtgtccgtgcttcatag 91  Q
    |||||| ||||||||||||||||||||||||||    
T  35056966 acgcctaatctgaggagtgtccgtgcttcatag 35056998  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 44635580 - 44635612
Alignment:
Q  59 acgccttatctgaggagtgtccgtgcttcatag 91  Q
    |||||| ||||||||||||||||||||||||||    
T  44635580 acgcctaatctgaggagtgtccgtgcttcatag 44635612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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