View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9033_low_2 (Length: 562)
Name: NF9033_low_2
Description: NF9033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9033_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 25 - 268
Target Start/End: Complemental strand, 41234376 - 41234130
Alignment:
| Q |
25 |
tttcttagcaattaaggaaatatattgaagttaggaaatagatagaactattgattagtcnnnnnnnnngttgggaaatacagtcaacaaaagatataga |
124 |
Q |
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| T |
41234376 |
tttcttagcaattaaggaaatatattaaagttaggaaatagatagaactattgattagtcaaaaaaaa-gttgggaaatacagtcaacaaaagatataga |
41234278 |
T |
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| Q |
125 |
tgaaaaatatatatgaaaattttgagtaacttctcagtttttctcactaaatttattgacgaaatgacgagacattagtggcgatttcaattttttaatc |
224 |
Q |
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| T |
41234277 |
tgaaaaatatatatgaaaattttgagtaacttctcagtttttctcactaaatttattgacgaaatgacgagacattagtggcgatttcaattttttaatc |
41234178 |
T |
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| Q |
225 |
ccctacaaaatctctaattggccac----tctcattaaggtttataag |
268 |
Q |
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| T |
41234177 |
ccctacaaaatctctaattggccactctctctcattaaggtttataag |
41234130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 352 - 500
Target Start/End: Complemental strand, 41234047 - 41233910
Alignment:
| Q |
352 |
ggtaataaccaacacatacaatgtaaattttatacgttcaaatagagtaatagaatatcctaatttggcctgtgtttgtgttgacagtagaatcacctct |
451 |
Q |
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| T |
41234047 |
ggtaataaccaacacatacaatgtaaattttatacgttcaaatagagtaatagaatatcctaatttagtttatgtttgt-----------tatcaccgct |
41233959 |
T |
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| Q |
452 |
aacacgcgttttagctaaagcttaaatatatagtttctaatatcacgtc |
500 |
Q |
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| T |
41233958 |
aagatacgtttcagctgaagcttaaatatatagtttctaatatcacgtc |
41233910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 534
Target Start/End: Complemental strand, 41232314 - 41232276
Alignment:
| Q |
496 |
acgtccaaattgcattggaacacaaaattagtgaacaca |
534 |
Q |
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| T |
41232314 |
acgtccaaattgcattggaaaacaaaattagtaaacaca |
41232276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 509
Target Start/End: Original strand, 19477652 - 19477714
Alignment:
| Q |
448 |
ctctaacacgcgttttagctaaagcttaaatatatagtttct-aatatcacgtccaaattgca |
509 |
Q |
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| T |
19477652 |
ctctaacgcgcgtttcagcttaagcttgaatatatagcttttcaatatcacgtccaaattgca |
19477714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 509
Target Start/End: Original strand, 19548577 - 19548639
Alignment:
| Q |
448 |
ctctaacacgcgttttagctaaagcttaaatatatagtttct-aatatcacgtccaaattgca |
509 |
Q |
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| T |
19548577 |
ctctaacgcgcgtttcagcttaagcttgaatatatagcttttcaatatcacgtccaaattgca |
19548639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 509
Target Start/End: Complemental strand, 19584111 - 19584049
Alignment:
| Q |
448 |
ctctaacacgcgttttagctaaagcttaaatatatagtttct-aatatcacgtccaaattgca |
509 |
Q |
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| T |
19584111 |
ctctaacgcgcgtttcagcttaagcttgaatatatagcttttcaatatcacgtccaaattgca |
19584049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 509
Target Start/End: Original strand, 22710616 - 22710678
Alignment:
| Q |
448 |
ctctaacacgcgttttagctaaagcttaaatatatagtttct-aatatcacgtccaaattgca |
509 |
Q |
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| T |
22710616 |
ctctaacgcgcgtttcagcttaagcttgaatatatagcttttcaatatcacgtccaaattgca |
22710678 |
T |
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