View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9033_low_3 (Length: 484)
Name: NF9033_low_3
Description: NF9033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9033_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 250 - 471
Target Start/End: Original strand, 52365784 - 52366005
Alignment:
| Q |
250 |
gtaatgcagtaattaaaataaatataagagaagaagatgattacaaaatatttatatgtttataagtaggaaacttctctcaccttcaagctagtaatgt |
349 |
Q |
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| T |
52365784 |
gtaatgcagtaattaaaataaatataagagaagaagatgattacaaaatatttatatgtttataagtaggaaacatctctcaccttcaagctagtaatgt |
52365883 |
T |
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| Q |
350 |
aaagttgagtgattccaatcttaactttaagaatatctatccaaaatgtttgttgcacatgaataacctgattattattcatacatgcatactcaccaat |
449 |
Q |
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| T |
52365884 |
aaagttgagtgattcctatcttaactttaagaatatctatccaaaatgtttgttgcacatgaataacctgattattattcatacatgcatactcaccaat |
52365983 |
T |
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| Q |
450 |
tatattatttatttgatctctg |
471 |
Q |
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| T |
52365984 |
tatattatttatttgatctctg |
52366005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 52365562 - 52365694
Alignment:
| Q |
21 |
agttacataatggatcaagataaaaggttcttacttcttacatatattaaaccaatttcaatttatatatatcaaaagtttcatatgactaaaaattcat |
120 |
Q |
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| T |
52365562 |
agttacataatggatcaagataaaaggttcttacttcttacatatattaaaccaatttcaatttatatatatcaaaagtttcatatgactaaaaattcat |
52365661 |
T |
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| Q |
121 |
agtcttgatttgatgcagattaatatggccttt |
153 |
Q |
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| T |
52365662 |
agtcttgatttgatgtagattaatatggccttt |
52365694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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