View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9033_low_4 (Length: 402)

Name: NF9033_low_4
Description: NF9033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9033_low_4
NF9033_low_4
[»] chr7 (15 HSPs)
chr7 (192-386)||(30140590-30140784)
chr7 (28-169)||(3960057-3960198)
chr7 (28-173)||(15633239-15633384)
chr7 (28-165)||(30622489-30622626)
chr7 (28-164)||(32480225-32480361)
chr7 (28-164)||(3896475-3896611)
chr7 (28-164)||(30502516-30502652)
chr7 (28-164)||(17238667-17238803)
chr7 (28-136)||(27458148-27458256)
chr7 (31-174)||(13014947-13015090)
chr7 (28-162)||(24226203-24226337)
chr7 (28-134)||(41601443-41601549)
chr7 (28-174)||(8118783-8118929)
chr7 (28-133)||(47081677-47081782)
chr7 (28-138)||(3205151-3205261)
[»] chr4 (16 HSPs)
chr4 (28-173)||(28860799-28860944)
chr4 (30-173)||(12075373-12075516)
chr4 (28-169)||(34301819-34301960)
chr4 (28-164)||(55227622-55227758)
chr4 (28-164)||(30859373-30859509)
chr4 (28-164)||(30190941-30191077)
chr4 (28-165)||(18878184-18878321)
chr4 (28-165)||(27087440-27087577)
chr4 (28-164)||(13686018-13686154)
chr4 (28-165)||(54027695-54027832)
chr4 (28-70)||(12355234-12355276)
chr4 (28-162)||(20527775-20527909)
chr4 (28-70)||(27066628-27066670)
chr4 (28-70)||(27066822-27066864)
chr4 (28-133)||(4235323-4235428)
chr4 (116-169)||(12355322-12355375)
[»] scaffold0303 (1 HSPs)
scaffold0303 (28-174)||(14207-14353)
[»] chr3 (17 HSPs)
chr3 (28-173)||(18765578-18765723)
chr3 (28-171)||(31973508-31973651)
chr3 (28-154)||(31660977-31661103)
chr3 (28-165)||(31935250-31935387)
chr3 (28-164)||(17790162-17790298)
chr3 (28-164)||(19098604-19098740)
chr3 (28-164)||(6006029-6006165)
chr3 (28-174)||(16739414-16739560)
chr3 (28-133)||(31809172-31809277)
chr3 (28-164)||(31228248-31228384)
chr3 (28-174)||(8566024-8566170)
chr3 (37-169)||(42626064-42626196)
chr3 (43-98)||(19792312-19792367)
chr3 (51-133)||(45680129-45680211)
chr3 (106-164)||(49644558-49644616)
chr3 (75-164)||(35906926-35907015)
chr3 (126-174)||(4479857-4479905)
[»] chr1 (10 HSPs)
chr1 (28-174)||(18122732-18122880)
chr1 (28-153)||(10771227-10771352)
chr1 (28-171)||(30981236-30981379)
chr1 (28-174)||(41117199-41117345)
chr1 (28-164)||(30033592-30033728)
chr1 (28-165)||(21701466-21701603)
chr1 (28-169)||(34696092-34696233)
chr1 (28-164)||(24083385-24083523)
chr1 (28-173)||(24065223-24065368)
chr1 (28-164)||(9361777-9361913)
[»] chr6 (9 HSPs)
chr6 (28-163)||(17752260-17752395)
chr6 (77-173)||(22736516-22736612)
chr6 (28-164)||(1493236-1493372)
chr6 (28-165)||(30140931-30141068)
chr6 (28-171)||(31029138-31029281)
chr6 (108-164)||(10910965-10911021)
chr6 (28-171)||(9959237-9959380)
chr6 (31-164)||(34355738-34355871)
chr6 (28-134)||(16890220-16890326)
[»] chr5 (9 HSPs)
chr5 (28-155)||(27493263-27493390)
chr5 (28-164)||(22292389-22292525)
chr5 (28-169)||(29754943-29755083)
chr5 (28-174)||(2157761-2157907)
chr5 (33-164)||(19741524-19741655)
chr5 (31-165)||(13948782-13948916)
chr5 (28-111)||(40299912-40299995)
chr5 (75-164)||(18759772-18759861)
chr5 (27-135)||(28246266-28246374)
[»] chr8 (14 HSPs)
chr8 (28-137)||(34723874-34723983)
chr8 (28-164)||(14505731-14505867)
chr8 (28-164)||(15990404-15990540)
chr8 (28-164)||(17837148-17837284)
chr8 (28-164)||(37590031-37590167)
chr8 (28-171)||(35285044-35285187)
chr8 (28-161)||(27978755-27978888)
chr8 (28-161)||(28036024-28036157)
chr8 (28-73)||(10601104-10601149)
chr8 (28-164)||(14657700-14657836)
chr8 (28-171)||(20526157-20526302)
chr8 (28-64)||(1186555-1186591)
chr8 (28-132)||(4518364-4518468)
chr8 (30-174)||(13811605-13811749)
[»] chr2 (12 HSPs)
chr2 (28-164)||(16206549-16206685)
chr2 (28-169)||(14231033-14231177)
chr2 (28-134)||(36641369-36641475)
chr2 (28-164)||(2058718-2058854)
chr2 (28-164)||(20661203-20661339)
chr2 (28-134)||(27267912-27268018)
chr2 (28-85)||(11502332-11502389)
chr2 (67-164)||(23379917-23380014)
chr2 (28-161)||(44886305-44886438)
chr2 (28-72)||(10973634-10973678)
chr2 (116-172)||(2973405-2973461)
chr2 (28-164)||(11818437-11818573)
[»] scaffold0643 (1 HSPs)
scaffold0643 (28-169)||(1058-1199)
[»] scaffold0040 (1 HSPs)
scaffold0040 (28-164)||(62482-62618)
[»] scaffold0789 (1 HSPs)
scaffold0789 (28-165)||(4209-4346)
[»] scaffold0019 (1 HSPs)
scaffold0019 (28-169)||(73327-73468)
[»] scaffold0198 (1 HSPs)
scaffold0198 (81-169)||(21811-21898)
[»] scaffold1964 (1 HSPs)
scaffold1964 (28-73)||(1122-1167)
[»] scaffold0543 (1 HSPs)
scaffold0543 (119-164)||(4497-4542)
[»] scaffold0492 (1 HSPs)
scaffold0492 (119-164)||(6043-6088)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 192 - 386
Target Start/End: Complemental strand, 30140784 - 30140590
Alignment:
Q  192 taacatcaaagtcttggtgatctgagctttgagcgactccaccgtgggttgtttctgtactttttcctatatttttaaagtgcaagaatatctcgatttg 291  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30140784 taacctcaaagtcttggtgatctgagctttgagcgactccaccgtgggttgtttctgtactttttcctatatttttaaagtgcaagaatatctcgatttg 30140685  T
Q  292 tgatagtcttttatatgtggttgaaaagtggagattcaataggcgaatgtggttttacttagtgaatcagtctttctttaaaataaagtaatttc 386  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  30140684 tgatagtcttttatatatggttgaaaagtggagattcaataggtgaatgtggttttacttagggaatcagtctttctttaaagtaaagtaatttc 30140590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 3960198 - 3960057
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||| ||||||| |||||| |||||||||||||| | ||| || |||||| ||||||||||||||| | ||||   |||||||||||||| ||||||    
T  3960198 tggagttcgttaggctacaagcaaatgtggtagctcataatcttgcaagagagaccacattattagctaattccgttacttattatgttatactcaattg 3960099  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttt 169  Q
    ||||||||||| ||| || ||||||||||||||| |||||||    
T  3960098 tattgaatctttaataattaatgaaatgttataaacaccttt 3960057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 15633239 - 15633384
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||| || ||||| ||||| ||| |||||||| |||| ||||| | ||  |||||||||||    
T  15633239 tggagtttgttaggcgacaagccaatgaggttgctcatactcttgcaagagaagccacgttactagctagtcccgttgtttactttgaaatacccaattg 15633338  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttttctt 173  Q
    ||||||| ||   ||||| ||||||||| ||||||||  |||||||    
T  15633339 tattgaaactattattatcaatgaaatgctataagcatgttttctt 15633384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 30622626 - 30622489
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||| || |||||||||||  ||||||||||||| | ||| || |||||||||||||||||||||| | ||||   |||||||| ||||||||||||    
T  30622626 tggagttcgtcaggcgacaagcatatgtggtagctcataatcttgcaagagaggccacattattagctaatcccgtttcttattatgctatacccaattg 30622527  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcac 165  Q
    |||||||||||  || || ||| ||||| |||||||||    
T  30622526 tattgaatctttgatcatcaataaaatgctataagcac 30622489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 32480225 - 32480361
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||| || || |||||||| |  ||||||||| ||| |||||||| |  ||||| ||||||    
T  32480225 tggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagggaggccacgtctttagctagtcccgcagtttattttaatatactcaattg 32480324  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||| ||||||||| ||||||||    
T  32480325 tattgaaactcttattattaatgaaatgctataagca 32480361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 3896475 - 3896611
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| ||||| |||||  | || || ||||||||||| |  ||||||||| |||  ||||||| || ||||||| ||||    
T  3896475 tggagtttgttaggcgacaagccaacgtggttgctcatgcacttgcaagagaggccacgtctttagctagtcccgccgtttattttgatatacccgattg 3896574  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||| ||||||||| ||||||||    
T  3896575 tattgaaactcttattattaatgaaatgctataagca 3896611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 30502516 - 30502652
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||  ||||||| ||| | ||| ||||| ||||| || ||||||||||| |  ||||||||| ||| |||||||| || ||||||| ||||    
T  30502516 tggagtttgttactcgacaagtcaacgcggttgctcatactcttgcaagagaggccacgtccttagctagtcccgcagtttattttgatatacccgattg 30502615  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||| ||||||||||||||||||    
T  30502616 tattgaaactcttattattaatgaaatgttataagca 30502652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 17238803 - 17238667
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| | ||| |||||  | || || ||||| |||||||| ||| ||||| ||    ||||||||| ||||||| | ||    
T  17238803 tggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacattcttaactagtcccactatttattatgatatacccgaatg 17238704  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||||| | |||||| ||||||||| ||||||||    
T  17238703 tattgaatccttaattatcaatgaaatgctataagca 17238667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 27458148 - 27458256
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||| ||||| |||||||||| | ||| ||| || |||| |||||||| ||||| |  ||||||||  |||||||||||||||  |||||||||||    
T  27458148 tggagtttattaggagacaagccaacgaggttgctaacgctcttgctagagatgccacgtccttagctagctccgtagtttattatgacatacccaattg 27458247  T
Q  128 tattgaatc 136  Q
    |||||||||    
T  27458248 tattgaatc 27458256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 174
Target Start/End: Complemental strand, 13015090 - 13014947
Alignment:
Q  31 agtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattgtat 130  Q
    |||||||||||||||||||||| | ||| |||||  |||| || |||||  |||| ||| |||||||| | || ||||||| ||  ||||||||||||||    
T  13015090 agtttgttaggcgacaagccaacgaggttgctcatgctcttgcaagagaatccacgttactagctagtcctgttgtttattttgagatacccaattgtat 13014991  T
Q  131 tgaatcttcaattataaatgaaatgttataagcaccttttcttc 174  Q
    |||| ||   ||||| ||||||||| ||||||||  ||||||||    
T  13014990 tgaaactattattatcaatgaaatgctataagcatgttttcttc 13014947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 24226337 - 24226203
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| | ||| |||||  |||| ||  |||||||||| |  ||||||||| |||  |||||||||| |||||||| |||    
T  24226337 tggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccgacgtttattatgatatacccacttg 24226238  T
Q  128 tattgaatcttcaattataaatgaaatgttataag 162  Q
    |||| || ||   ||||| ||||||||| ||||||    
T  24226237 tatttaaactcttattattaatgaaatgctataag 24226203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 41601443 - 41601549
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||| |||||||| | ||| | |||  |||| ||  ||||||||||||  ||||||||| |||  |||||||||| ||||||||||||    
T  41601443 tggagtttgttaggcggcaagccaaagcggttgttcatgctcttgcacgagaggccacatctttagctagtcccgctgtttattatgatatacccaattg 41601542  T
Q  128 tattgaa 134  Q
    |||||||    
T  41601543 tattgaa 41601549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 8118929 - 8118783
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||||| || | ||| |||||  |||| ||  |||||||||| |  ||||||||| |||  || ||||||| ||||||||||||    
T  8118929 tggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatgatatacccaattg 8118830  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttttcttc 174  Q
    ||||||  ||   || || ||||||||| |||||||| |||| ||||    
T  8118829 tattgagactattatgatcaatgaaatgctataagcatctttccttc 8118783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 47081782 - 47081677
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||||| || | ||| |||||  |||| ||  |||||||||| |  ||||||||| |||  || ||||||| ||||||||||||    
T  47081782 tggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatgatatacccaattg 47081683  T
Q  128 tattga 133  Q
    ||||||    
T  47081682 tattga 47081677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 3205261 - 3205151
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||| |||| ||||| |||||  |||| || ||||| ||||| |  ||||||||| |||  |||||||  | ||||||| ||||    
T  3205261 tggagtttgttaggcgacaacccaacgtggttgctcatgctcttgcaagagaagccacgtctttagctagtcccgccgtttatttcgatatacccgattg 3205162  T
Q  128 tattgaatctt 138  Q
    |||| ||||||    
T  3205161 tattaaatctt 3205151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 28860799 - 28860944
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  28860799 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgctatactcaattg 28860898  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttttctt 173  Q
    |||||||||||  ||||||||||| ||| |||||||||||||||||    
T  28860899 tattgaatctttgattataaatgatatgctataagcaccttttctt 28860944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 12075373 - 12075516
Alignment:
Q  30 gagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattgta 129  Q
    ||||||||||||||| |||| || ||||||| ||| ||||||  ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  12075373 gagtttgttaggcgataagctaacgtggtaggtcatactctcattagagaggccacattattagctagttcagtagtttattatgttatacccaattgta 12075472  T
Q  130 ttgaatcttcaattataaatgaaatgttataagcaccttttctt 173  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  12075473 ttgaatcttcgattataaatgaaatgttataagcaccttttctt 12075516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 28 - 169
Target Start/End: Original strand, 34301819 - 34301960
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||| |||||||||||| | |||| ||||||||| | ||| || | ||||||||||||| |||||||| ||||   |||||||| ||||||||||||    
T  34301819 tggagttcgttaggcgacaaacaaatgcggtagctcataatcttgcaaaagaggccacattaatagctagtcccgttacttattatgctatacccaattg 34301918  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttt 169  Q
    ||||||||||| ||| || ||||||||| |||||||||||||    
T  34301919 tattgaatctttaatcattaatgaaatgctataagcaccttt 34301960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 55227622 - 55227758
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||| |||| ||||| |||||  |||| || || ||||||||||  ||||||||| |||  ||||||| |  ||||||||||||    
T  55227622 tggagtttgttaggcgacaaaccaacgtggttgctcatgctcttgcaagggaggccacatctttagctagtcccgccgtttattttaatatacccaattg 55227721  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||||||||||||| ||||||||    
T  55227722 tattgaaactcttattataaatgaaatgctataagca 55227758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 30859373 - 30859509
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| ||||| |||||  |||| || || |||||||| |  ||| ||||| |||  ||||||| |  ||||||||||||    
T  30859373 tggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttaactagtcccgccgtttattttaatatacccaattg 30859472  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||||||||||||| ||||||||    
T  30859473 tattgaaactcttattataaatgaaatgctataagca 30859509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 30191077 - 30190941
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||| ||||||||| ||||| |||||  ||||  | |||||| |||| |  ||||||||| |||  ||||||| || |||| |||||||    
T  30191077 tggagtttgttaggcaacaagccaacgtggttgctcatgctcttacaagagagaccacgtctttagctagtcccgccgtttattttgatatatccaattg 30190978  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||| ||||||||||||||||||    
T  30190977 tattgaaactcttattattaatgaaatgttataagca 30190941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 18878184 - 18878321
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||| |||||  || |||||  || | ||  |||||||||| || ||||||| |  ||| |||||||||| |||||||| |||    
T  18878184 tggagtttgttaggcgacaagtcaatgcagttgctcatgcttttgcacgagaggccacgtttttagctaatctcgtcgtttattatgatatacccacttg 18878283  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcac 165  Q
    ||||||| ||   ||||| ||||||||| |||||||||    
T  18878284 tattgaaactattattattaatgaaatgctataagcac 18878321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 27087577 - 27087440
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||||| |||||||| | ||||||||| || |  || ||||||||  | |||||| |||   | |||| |  ||||| ||||||    
T  27087577 tggagtttgttaggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcatatactcaattg 27087478  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcac 165  Q
    ||||||| |||  ||||| ||||||||| |||||||||    
T  27087477 tattgaaactttgattattaatgaaatgctataagcac 27087440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 13686018 - 13686154
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||||| || | ||| |||||   ||| || ||||| | ||| ||| |||||||| || | ||||||| |  ||||||| ||||    
T  13686018 tggagtttgttaggcgacaagcaaacggggttgctcatgttcttgcaagagaagtcacgttactagctagtcccattgtttattttcatatacccgattg 13686117  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||||||   ||||| ||||||||| ||||||||    
T  13686118 tattgaatctcttattattaatgaaatgctataagca 13686154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 54027832 - 54027695
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||| ||||||||||||| |||||||| ||||||||||| |   | || ||||||||  | |||| | |||   |||||| |  |||||||||||     
T  54027832 tggagttttttaggcgacaagctaatgtggtggctcacactcttgtaggggaagccacatttctcgctactcccgctatttattttcatatacccaatta 54027733  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcac 165  Q
    ||||||| |||  ||||| ||||||||| |||||||||    
T  54027732 tattgaaactttgattattaatgaaatgatataagcac 54027695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 12355234 - 12355276
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactct 70  Q
    |||||||||||||||||||||  |||||||| |||||||||||    
T  12355234 tggagtttgttaggcgacaaggtaatgtggtggctcacactct 12355276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 20527909 - 20527775
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||| ||||| || | ||| |||||  |||| || |||||||||   ||| | |||||| |||   ||||||||| ||||||| ||||    
T  20527909 tggagtttgttaggcggcaagctaacggggttgctcatgctcttgcaagagaggccttgttactcgctagtcccgccatttattatgatatacccgattg 20527810  T
Q  128 tattgaatcttcaattataaatgaaatgttataag 162  Q
    ||||||| ||   ||||| ||||||||| ||||||    
T  20527809 tattgaaactcttattatcaatgaaatgctataag 20527775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 27066670 - 27066628
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactct 70  Q
    |||||||||||||||||||||| |||||||| | |||||||||    
T  27066670 tggagtttgttaggcgacaagctaatgtggtgggtcacactct 27066628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 27066864 - 27066822
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactct 70  Q
    |||||||||||||||||||||| |||||||| | |||||||||    
T  27066864 tggagtttgttaggcgacaagctaatgtggtgggtcacactct 27066822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 4235323 - 4235428
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||| ||||||||| | | | |||||  |||| ||  |||||||||| |  ||||||||| | |  |||||||||| |||| |||||||    
T  4235323 tggagtttgttaggccacaagccaacgcgatggctcatgctcttgcacgagaggccacgtctttagctagttctgccgtttattatgatatatccaattg 4235422  T
Q  128 tattga 133  Q
    ||||||    
T  4235423 tattga 4235428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 12355322 - 12355375
Alignment:
Q  116 tatacccaattgtattgaatcttcaattataaatgaaatgttataagcaccttt 169  Q
    ||||||||||||||||||| |||  ||||| ||||||||| | |||||||||||    
T  12355322 tatacccaattgtattgaaactttgattattaatgaaatgctttaagcaccttt 12355375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 14207 - 14353
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  14207 tggagtttgttaggcgacaagccaatgtggtagctcacactgtccctagagaggccacattattagctagtgccgtagtttattatcctatacccaattg 14306  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttttcttc 174  Q
    |||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  14307 tattgaatcttcgattgtaaatgaaatgctataagcaccttttcttc 14353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 28 - 173
Target Start/End: Complemental strand, 18765723 - 18765578
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  18765723 tggagtttgttaggcgacaagccaatttggtagctcatactctcgctagagaggccacattaatagctagtgccgtaatttattatgttatacccaattg 18765624  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttttctt 173  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||    
T  18765623 tattgaatcttctattataaatgaaatgctataagcactttttctt 18765578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 31973508 - 31973651
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| | ||| |||||  |||| ||  |||||||||| |  ||||||||| |||  |||||||||| ||||||||||||    
T  31973508 tggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccgccgtttattatgatatacccaattg 31973607  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttttc 171  Q
    ||||||||||| ||| || ||||||||| | ||||||| |||||    
T  31973608 tattgaatctttaatgattaatgaaatgctctaagcacgttttc 31973651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 31661103 - 31660977
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| | ||| |||||  |||| ||  |||||| ||| || ||| ||||| |||  |||||||||| ||||||||||||    
T  31661103 tggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaggtcacttttttatctagtcccgccgtttattatgatatacccaattg 31661004  T
Q  128 tattgaatcttcaattataaatgaaat 154  Q
    ||||||||||| ||| || ||||||||    
T  31661003 tattgaatctttaatgattaatgaaat 31660977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 31935250 - 31935387
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| |  || |||||  |||| ||  |||||||||| |  ||||||||| |||  |||||||||| ||||||||||||    
T  31935250 tggagtttgttaggcgacaagccaacgcagttgctcatgctcttgcacgagaggccacgtctttagctagtcccgccgtttattatgatatacccaattg 31935349  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcac 165  Q
    |||||||||||  || || ||||||||| | |||||||    
T  31935350 tattgaatctttgatgattaatgaaatgctctaagcac 31935387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 17790162 - 17790298
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| ||||| |||||| |||| || || |||||||| |  |||||||||   |  ||||||| |  ||||||||||||    
T  17790162 tggagtttgttaggcgacaagccaacgtggttgctcacgctcttgcaagggaggccacgtctttagctagtctagccgtttattttaatatacccaattg 17790261  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||||||||||||| ||||||||    
T  17790262 tattgaaactcttattataaatgaaatgctataagca 17790298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 19098604 - 19098740
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| ||||| |||||| |||| || || |||||||| |  |||||||||   |  ||||||| |  ||||||||||||    
T  19098604 tggagtttgttaggcgacaagccaacgtggttgctcacgctcttgcaagggaggccacgtctttagctagtctagccgtttattttaatatacccaattg 19098703  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||||||||||||| ||||||||    
T  19098704 tattgaaactcttattataaatgaaatgctataagca 19098740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 6006165 - 6006029
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| |||||  ||||  |||| || || || ||||| |  ||||||||| |||  ||||||| |  ||||||||||||    
T  6006165 tggagtttgttaggcgacaagccaacgtggtttctcatgctcttgcaagggaagccacgtctttagctagtcccgccgtttattttaatatacccaattg 6006066  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||||||||||||| ||||||||    
T  6006065 tattgaaactcttattataaatgaaatgctataagca 6006029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 16739560 - 16739414
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||| |||| | | | ||| |  |||| || ||||| ||||| ||| |||||||| |||| ||||||| ||  |||||||||||    
T  16739560 tggagtttgttaggcgacaaaccaacgagattgctaatgctcttgcaagagaagccacgttactagctagtcccgttgtttattttgagatacccaattg 16739461  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttttcttc 174  Q
    ||||||| ||   ||||| ||||||||| ||||||||  ||||||||    
T  16739460 tattgaaactattattatcaatgaaatgctataagcatgttttcttc 16739414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 31809172 - 31809277
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| | ||| |||||  |||| ||  |||||||||| |  ||||||||| |||  |||||||||| |||| |||||||    
T  31809172 tggagtttgttaggcgacaagccaacgcggtggctcatcctcttgcacgagaggccacgtctttagctagtcccgccgtttattatgatatatccaattg 31809271  T
Q  128 tattga 133  Q
    ||||||    
T  31809272 tattga 31809277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 31228248 - 31228384
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| ||||| |||||  |||| || |  |||||||| |  ||||||| | ||| |||||||| |  ||||  ||||||    
T  31228248 tggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaatggaggccacgtctttagctaatcccgcagtttattttaatatattcaattg 31228347  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||||||||||||| ||||||||    
T  31228348 tattgaaactcttattataaatgaaatgctataagca 31228384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 8566024 - 8566170
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||||| || | ||| |||||  |||| ||  |||||||||| |  ||||||||| |||  || ||||||| ||||||||||||    
T  8566024 tggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatgatatacccaattg 8566123  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttttcttc 174  Q
    ||||||  ||   || || ||||||||| |||||||| |||| ||||    
T  8566124 tattgagactattatgatcaatgaaatgctataagcatctttccttc 8566170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 42626064 - 42626196
Alignment:
Q  37 ttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattgtattgaatc 136  Q
    ||||||||||||| |||| ||  |||||  |||| |||||||| || ||||  ||||||||| ||||  ||||||||||||| ||  ||||||||||| |    
T  42626064 ttaggcgacaagcgaatgcggcggctcatgctctggctagagaagcaacatccttagctagtcccgttatttattatgttatcccacattgtattgaaac 42626163  T
Q  137 ttcaattataaatgaaatgttataagcaccttt 169  Q
    |   ||||| ||| ||||| |||||||| ||||    
T  42626164 tattattattaataaaatgctataagcatcttt 42626196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 19792312 - 19792367
Alignment:
Q  43 gacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagt 98  Q
    ||||||| |||||||| ||||| || || |||||||||||||| ||||||||||||    
T  19792312 gacaagcaaatgtggttgctcatacacttgctagagaggccactttattagctagt 19792367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 45680211 - 45680129
Alignment:
Q  51 aatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattgtattga 133  Q
    |||||| | ||||| ||||| || |||||||||||||| || |||||| || | ||||||| |  ||||||||||||||||||    
T  45680211 aatgtgattgctcatactcttgcaagagaggccacattttttgctagtccctttgtttattttcgtatacccaattgtattga 45680129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 49644558 - 49644616
Alignment:
Q  106 tttattatgttatacccaattgtattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||||| ||||||| | ||||||||||| | |||||| ||||||||| ||||||||    
T  49644558 tttattatgatatacccgaatgtattgaatccttaattatcaatgaaatgctataagca 49644616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 35907015 - 35906926
Alignment:
Q  75 agagaggccacattattagctagtgccgtagtttattatgttatacccaattgtattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||| ||||| ||| |||||||| |||  ||||||| ||  |||||||||||||||||| ||   ||||| ||||||||| ||||||||    
T  35907015 agagaagccacgttactagctagtcccgctgtttattttgagatacccaattgtattgaaactatcattatcaatgaaatgctataagca 35906926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 4479905 - 4479857
Alignment:
Q  126 tgtattgaatcttcaattataaatgaaatgttataagcaccttttcttc 174  Q
    ||||||||||||   ||||| |||||||||||||||||| |||||||||    
T  4479905 tgtattgaatctattattattaatgaaatgttataagcatcttttcttc 4479857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 18122732 - 18122880
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtt--tattatgttatacccaat 125  Q
    |||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||    
T  18122732 tggagtttattaggcgacaaatcaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttatattatgctatacccaat 18122831  T
Q  126 tgtattgaatcttcaattataaatgaaatgttataagcaccttttcttc 174  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||    
T  18122832 tatattgaatcttcaattataaatgaaatgctataagcaccttttcttc 18122880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 10771227 - 10771352
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||| ||    
T  10771227 tggagtttgttaggcgacaagccaatgtggtagctcatattctcgctagagagaccacattaatagctagtgccgtagtttattatgctatacccaactg 10771326  T
Q  128 tattgaatcttcaattataaatgaaa 153  Q
    |||||||||||| |||||||||||||    
T  10771327 tattgaatcttcgattataaatgaaa 10771352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 30981236 - 30981379
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||| |||||   |||||||| ||||| ||||||||  || ||| ||||||  | |||||| ||||   ||||| ||||||||||| |||    
T  30981236 tggagtttgttaggagacaaataaatgtggttgctcatactctcgcaggaaaggtcacatttctcgctagttccgttacttattttgttatacccagttg 30981335  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttttc 171  Q
    ||||||| ||| |||||| ||||| |||||||||||||||||||    
T  30981336 tattgaaactttaattattaatgacatgttataagcaccttttc 30981379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 41117199 - 41117345
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||||| ||| |||||  |||| || ||||| ||||| ||| |||||||| ||   ||||||| ||  |||||||||||    
T  41117199 tggagtttgttaggcgacaagccaatgaggttgctcatgctcttgcaagagaagccacgttactagctagtcccaccgtttattttgagatacccaattg 41117298  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttttcttc 174  Q
    |||| || ||   ||||| ||||||||| ||||||||  ||||||||    
T  41117299 tattcaaactattattatcaatgaaatgctataagcatgttttcttc 41117345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 30033592 - 30033728
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||  ||||| |||||  |||| || || |||||||| |  ||||||||| |||  ||||||| |  |||||||||||     
T  30033592 tggagtttgttaggcgacaagccagcgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaatatacccaatta 30033691  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||||||||||||| ||||||||    
T  30033692 tattgaaactcttattataaatgaaatgctataagca 30033728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 21701603 - 21701466
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||| ||||||| ||||| |||||  ||||  |  |||||||||| |  ||||||||| |||  |||||||||| ||||| ||||||    
T  21701603 tggagtttgttaggcgataagccaacgtggttgctcatgctctttcacgagaggccacgtctttagctagtcccgccgtttattatgatatactcaattg 21701504  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcac 165  Q
    ||||||| ||   || || ||||||||| |||||||||    
T  21701503 tattgaaactcttatgattaatgaaatgctataagcac 21701466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 34696233 - 34696092
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||| |||| ||||||  |||||||| ||||| |||||||   ||||| |||| ||  ||||||||  ||| ||||||| |  ||||||| ||||    
T  34696233 tggagtttgctaggagacaagaaaatgtggttgctcatactctcgaaggagagaccacgtttctagctagtctcgttgtttattttcatataccccattg 34696134  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttt 169  Q
    ||||||| |||  ||||| ||||| ||| |||||||||||||    
T  34696133 tattgaaactttgattattaatgatatgatataagcaccttt 34696092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 24083385 - 24083523
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttat--tatgttatacccaat 125  Q
    ||||||||||||||||||||||||| | ||| |||||  | || || ||||| ||||| || ||||||||| |||   |||||  |||| ||||||  |     
T  24083385 tggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacgttcttagctagtcccgctatttattatatgatataccagaa 24083484  T
Q  126 tgtattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||||||| | |||||| ||||||||| ||||||||    
T  24083485 tgtattgaatccttaattattaatgaaatgctataagca 24083523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 24065223 - 24065368
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||||| || | ||| |||||   ||| ||  |||| ||||| ||| |||||||| |||| ||||||| |   |||||| ||||    
T  24065223 tggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagctagtcccgttgtttattttcacatacccgattg 24065322  T
Q  128 tattgaatcttc-aattataaatgaaatgttataagcaccttttctt 173  Q
    ||||||| ||||  ||||| ||||||||| ||||||||  |||||||    
T  24065323 tattgaa-cttcttattattaatgaaatgctataagcatgttttctt 24065368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 9361777 - 9361913
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| | ||| |||||  | || || ||||| ||||| || ||| |||||  ||   ||||||||| ||||||  | ||    
T  9361777 tggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacgttcttaactagtctcgctatttattatgatatacctgaatg 9361876  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    || |||||| | |||||| ||||||||| || |||||    
T  9361877 tactgaatccttaattatcaatgaaatgctagaagca 9361913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 28 - 163
Target Start/End: Complemental strand, 17752395 - 17752260
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17752395 tggagtttgtttggcaacaagccaatgtggtagctcactctctcgctacagaggccacattattagctagtgccgtagtttattatgttatacccaattg 17752296  T
Q  128 tattgaatcttcaattataaatgaaatgttataagc 163  Q
    |||||||||||| ||||||||||||||| |||||||    
T  17752295 tattgaatcttcgattataaatgaaatgctataagc 17752260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 22736612 - 22736516
Alignment:
Q  77 agaggccacattattagctagtgccgtagtttattatgttatacccaattgtattgaatcttcaattataaatgaaatgttataagcaccttttctt 173  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22736612 agaggccacattattagctagtgctgtagtttattatgctatacccaattgtattgaatcttcaattataaatgaaatgctataagcaccttttctt 22736516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 1493372 - 1493236
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| | ||| |||||  |||| || ||||||||||| |  ||||||||| |||  |||||||  | |||||||||||     
T  1493372 tggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcaagagaggccacgtctttagctagtcccgccgtttatttcgatatacccaatta 1493273  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||| ||||||||| ||||||||    
T  1493272 tattgaaactattattatcaatgaaatgctataagca 1493236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 30141068 - 30140931
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||||| |||||||| | ||||||||| || |  || ||||||||  | |||||| |||   | |||| |  ||||||||||||    
T  30141068 tggagtttgttaggcgacaagctaatgtggtggatcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcatatacccaattg 30140969  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcac 165  Q
    ||||||| |||  ||||| ||||||||| |||||||||    
T  30140968 tattgaaactttgattattaatgaaatgctataagcac 30140931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 31029138 - 31029281
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||||| ||   ||| ||||| ||||| ||  |||||||||| |  ||||||||| |||  || ||||||| ||||||||||||    
T  31029138 tggagtttgttaggcgacaagctaacacggtggctcatactcttgcacgagaggccacgtccttagctagtcccgctgtctattatgatatacccaattg 31029237  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttttc 171  Q
    ||||||  ||   || || ||||||||| |||||||| ||||||    
T  31029238 tattgagactattatgatcaatgaaatgctataagcatcttttc 31029281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 10910965 - 10911021
Alignment:
Q  108 tattatgttatacccaattgtattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||||||| ||||||||||||||| |||||| ||||||||| ||||||||    
T  10910965 tattatgatatacccgattgtattgaatctttaattatcaatgaaatgatataagca 10911021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 9959237 - 9959380
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| | ||| |||||  |||| ||  ||||   ||| |  ||||||||| |||  |||||||||| ||||||||||||    
T  9959237 tggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaactcacgtctttagctagtcccgccgtttattatgatatacccaattg 9959336  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttttc 171  Q
    ||||||  ||   || || ||||||||| ||||||||| |||||    
T  9959337 tattgagactattatgattaatgaaatgctataagcacattttc 9959380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 34355871 - 34355738
Alignment:
Q  31 agtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattgtat 130  Q
    ||||||||| |||| ||||||| | ||| |||||  |||| || |||||  |||  ||| |||||||| |||  ||||||| || |||||||||||||||    
T  34355871 agtttgttatgcgaaaagccaacgaggttgctcatgctcttgcaagagaaaccatgttactagctagtcccgctgtttattttgatatacccaattgtat 34355772  T
Q  131 tgaatcttcaattataaatgaaatgttataagca 164  Q
    |||| ||   ||||| ||||||||| ||||||||    
T  34355771 tgaaactcttattatcaatgaaatgctataagca 34355738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 16890220 - 16890326
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||  ||| | ||| |||||  |||| || ||||| |||||||  ||| ||||| |||  ||||||| || ||||||||||||    
T  16890220 tggagtttgttaggcgacaaagcaacgcggttgctcatgctcttgcaagagaagccacatctttaactagtaccgccgtttattttgatatacccaattg 16890319  T
Q  128 tattgaa 134  Q
    | |||||    
T  16890320 ttttgaa 16890326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 27493263 - 27493390
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||| ||||||||||||||| | |||||| ||||||||   ||||||||| |||||||||||| ||| ||||||||||||||||||||||||    
T  27493263 tggagtttgttaagcgacaagccaatgtagcagctcatactctcgcagaagaggccacgttattagctagtcccgcagtttattatgttatacccaattg 27493362  T
Q  128 tattgaatcttcaattataaatgaaatg 155  Q
    |||||||||||  |||||||||||||||    
T  27493363 tattgaatctttgattataaatgaaatg 27493390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 22292389 - 22292525
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| ||||| |||||  |||| || || |||||||| |  ||||||||| |||  ||||||| |  ||||||||||||    
T  22292389 tggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaatatacccaattg 22292488  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||||||||||||| ||||||||    
T  22292489 tattgaaactcttattataaatgaaatgctataagca 22292525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 29755083 - 29754943
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||||| |||||||| ||||||||||| || | ||| ||||||||  | |||||| |||   | |||| |  ||||||||||||    
T  29755083 tggagtttgttaggcgacaagctaatgtggtggctcacactcttgc-aaagaagccacatttctcgctagtcccgctatctattttcatatacccaattg 29754985  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttt 169  Q
    ||||||| |||  ||||| ||||||||| |||||||||||||    
T  29754984 tattgaaactttgattattaatgaaatgctataagcaccttt 29754943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 2157907 - 2157761
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| | | | ||| |  |||| || ||||| ||||| ||| |||||||| |||| ||||||| ||  |||||||||||    
T  2157907 tggagtttgttaggcgacaagccaacgagattgcttatgctcttgcaagagaagccacgttactagctagtcccgttgtttattttgagatacccaattg 2157808  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttttcttc 174  Q
    ||||||| ||   ||||| ||||||||| ||||||||  ||||||||    
T  2157807 tattgaaactattattatcaatgaaatgctataagcatgttttcttc 2157761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 19741655 - 19741524
Alignment:
Q  33 tttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattgtattg 132  Q
    ||||||||||||||||| || | ||| |||||  |||| || ||||| ||||||||| |||||||| |||  |||||| |||  ||||  | ||||||||    
T  19741655 tttgttaggcgacaagctaacggggttgctcatgctcttgcaagagaagccacattactagctagtcccgctgtttatcatgaaatacatatttgtattg 19741556  T
Q  133 aatcttcaattataaatgaaatgttataagca 164  Q
    || ||   ||||| ||||||||||||||||||    
T  19741555 aaactcttattatcaatgaaatgttataagca 19741524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 165
Target Start/End: Complemental strand, 13948916 - 13948782
Alignment:
Q  31 agtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattgtat 130  Q
    ||||||||||| ||||||| ||||| ||  |||| ||||||||  |||||| ||| ||  |||||||| |||| ||||||| |  ||||||| |||||||    
T  13948916 agtttgttaggagacaagcaaatgtagtttctcatactctcgcatgagaggtcacgtttctagctagttccgttgtttattttcatataccctattgtat 13948817  T
Q  131 tgaatcttcaattataaatgaaatgttataagcac 165  Q
    |||| |||  ||||| | ||| ||| |||||||||    
T  13948816 tgaaactttgattattattgatatgctataagcac 13948782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 40299912 - 40299995
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctag-agaggccacattattagctagtgccgtagtttatt 111  Q
    |||||||||||||||||||||| || ||||| ||||| ||||||| ||| ||||||||||||  | |||||| |||| |||||||    
T  40299912 tggagtttgttaggcgacaagcaaacgtggttgctcatactctcg-tagaagaggccacatttctcgctagttccgttgtttatt 40299995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 18759772 - 18759861
Alignment:
Q  75 agagaggccacattattagctagtgccgtagtttattatgttatacccaattgtattgaatcttcaattataaatgaaatgttataagca 164  Q
    |||||| ||||||  |||| |||| |||  ||||||| || ||||||||||| ||||||| |||  ||||| ||||||||| ||||||||    
T  18759772 agagagaccacatctttagttagtcccgccgtttattttgatatacccaattatattgaaacttttattattaatgaaatgctataagca 18759861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 28246266 - 28246374
Alignment:
Q  27 atggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaatt 126  Q
    |||||||||||||| ||||||| ||| ||||| | |||  |||| || ||||||| ||| |  ||| ||||| |||  ||||||| |  |||||||||||    
T  28246266 atggagtttgttagacgacaagtcaacgtggttgttcatgctcttgcaagagaggtcacgtctttaactagtcccgccgtttatttttatatacccaatt 28246365  T
Q  127 gtattgaat 135  Q
    |||||||||    
T  28246366 gtattgaat 28246374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 34723983 - 34723874
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||| || ||||| ||||| |  |||||||||  ||  |||||||||| ||||||||||||    
T  34723983 tggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagagaagccacgtctttagctagtctcgccgtttattatgatatacccaattg 34723884  T
Q  128 tattgaatct 137  Q
    ||||||||||    
T  34723883 tattgaatct 34723874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 14505731 - 14505867
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| ||||| |||||  |||| || || |||||||| |  ||||||||| |||  ||||||| |  ||||||||||||    
T  14505731 tggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaatatacccaattg 14505830  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||||||||||||| ||||||||    
T  14505831 tattgaaactcttattataaatgaaatgctataagca 14505867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 15990540 - 15990404
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||| | ||||| |||||  |||| || || |||||||| |  ||||||||| |||  ||||||| |  ||||||||||||    
T  15990540 tggagtttgttaggcgacaagcctacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaatatacccaattg 15990441  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||||||||||||| ||||||||    
T  15990440 tattgaaactcttattataaatgaaatgctataagca 15990404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 17837284 - 17837148
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| | ||| ||||| ||||| || ||||| ||||| |  ||||||||| | |  |||||||  | ||||||| |||     
T  17837284 tggagtttgttaggcgacaagccaacgcggttgctcatactcttgcaagagaagccacgtctttagctagtcctgccgtttatttcgatatacccgatta 17837185  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||||||| |||||| ||||||||| ||||||||    
T  17837184 tattgaatctttaattattaatgaaatgctataagca 17837148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 37590167 - 37590031
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| ||||| |||||  |||| || || |||||||| |  ||||||||| |||  ||||||| |  ||||||||||||    
T  37590167 tggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagttccgccgtttattttaatatacccaattg 37590068  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||| ||||||||| ||||||||    
T  37590067 tattgaaactcttattattaatgaaatgctataagca 37590031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 35285044 - 35285187
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||||| || | ||| ||||| ||||| ||  |||||||||| |  ||||||||| |||  || ||||||| ||||||||||||    
T  35285044 tggagtttgttaggcgacaagctaacgcggtggctcatactcttgcacgagaggccacgtccttagctagtcccgctgtctattatgatatacccaattg 35285143  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttttc 171  Q
    ||||||  ||   || || ||||||||| |||||||| ||||||    
T  35285144 tattgaggctattatgatcaatgaaatgctataagcatcttttc 35285187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 27978755 - 27978888
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||| ||||||||| | ||| |||||  |||| ||  |||||||||| |  ||||||||| || | |||||||||| |||||||||||     
T  27978755 tggagtttgttaggctacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccttcgtttattatgatatacccaattt 27978854  T
Q  128 tattgaatcttcaattataaatgaaatgttataa 161  Q
    ||||||| ||   || || |||||||||||||||    
T  27978855 tattgaaactattatgattaatgaaatgttataa 27978888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 28036024 - 28036157
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||| ||||||||| | ||| |||||  |||| ||  |||||||||| |  ||||||||| || | |||||||||| |||||||||||     
T  28036024 tggagtttgttaggctacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccttcgtttattatgatatacccaattt 28036123  T
Q  128 tattgaatcttcaattataaatgaaatgttataa 161  Q
    ||||||| ||   || || |||||||||||||||    
T  28036124 tattgaaactattatgattaatgaaatgttataa 28036157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 10601104 - 10601149
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgc 73  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||||    
T  10601104 tggagtttgttcggcgacaagctaatgtggtggctcacactctcgc 10601149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 14657836 - 14657700
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||||||||   |||| ||||  |||| || ||||| ||||| ||| |||| |||  | | ||||||| || |||||| |||||    
T  14657836 tggagtttgttaggcgacaagccaacaaggtatctcatgctcttgcaagagaagccacgttactagccagtcacattgtttattttgatatacctaattg 14657737  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   || || ||||||||| ||||||||    
T  14657736 tattgaaactcttataatcaatgaaatgctataagca 14657700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 20526302 - 20526157
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagt-gccgtagtttattatgttatacccaatt 126  Q
    ||||||||||| |||||||||  |||||||| ||||| ||||||||  | |||||||||||  |  ||||| ||  || |||||| |  |||||||||||    
T  20526302 tggagtttgttcggcgacaagttaatgtggtggctcatactctcgcaggggaggccacatttctcactagtcgcacta-tttattttcatatacccaatt 20526204  T
Q  127 gtattgaatcttcaattata--aatgaaatgttataagcaccttttc 171  Q
    |||||||| ||| |||||||  ||||||||| ||||| ||| |||||    
T  20526203 gtattgaaactttaattatactaatgaaatgctataaacactttttc 20526157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 1186555 - 1186591
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctca 64  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  1186555 tggagtttgttaggcgacaagccaacgtggttgctca 1186591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 4518364 - 4518468
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||||| || | ||| |||||  |||| ||  ||||| |||| |  ||||||||| |||  || ||||||| |||| |||||||    
T  4518364 tggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagagaccacgtctttagctagtcccgctgtctattatgatatatccaattg 4518463  T
Q  128 tattg 132  Q
    |||||    
T  4518464 tattg 4518468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 13811749 - 13811605
Alignment:
Q  30 gagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattgta 129  Q
    |||||| ||||||||||||| |||| ||  |||||  || | || ||||| ||||| |  ||||||||| |||   |||||||||| || ||  | ||||    
T  13811749 gagtttattaggcgacaagcgaatgcggcggctcatgctttagcaagagaagccacttccttagctagtcccgatatttattatgtaatcccacaatgta 13811650  T
Q  130 ttgaatcttcaattataaatgaaatgttataagcaccttttcttc 174  Q
    ||||||||   ||||||||||||||| |||||||| |||| ||||    
T  13811649 ttgaatctattattataaatgaaatgctataagcatctttccttc 13811605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 16206549 - 16206685
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| ||||| |||||  |||| || || |||||||| |  ||||||||| |||  ||||||| |  ||||||||||||    
T  16206549 tggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaatatacccaattg 16206648  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||||||||||||| ||||||||    
T  16206649 tattgaaactcttattataaatgaaatgctataagca 16206685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 169
Target Start/End: Original strand, 14231033 - 14231177
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||||| |||||||| ||||||||||| || || || ||||||||  | |||||| ||||  | |||| |  ||||||||||||    
T  14231033 tggagtttgttaggcgacaagctaatgtggtggctcacactcttgcaagggaagccacatttctcgctagtcccgttatctattttcatatacccaattg 14231132  T
Q  128 tattgaatcttcaattataa---atgaaatgttataagcaccttt 169  Q
    ||||||| |||  ||||| |   |||||||| |||||||||||||    
T  14231133 tattgaaactttgattattaatgatgaaatgctataagcaccttt 14231177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 36641369 - 36641475
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| | ||| |||||  |||| || | ||| ||||||||| |||||||| |||| ||||||| ||  ||||||||||     
T  36641369 tggagtttgttaggcgacaagccaacgaggttgctcatgctcttgcaaaagaagccacattactagctagtcccgttgtttattttgagatacccaatta 36641468  T
Q  128 tattgaa 134  Q
    |||||||    
T  36641469 tattgaa 36641475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 2058718 - 2058854
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||| ||||   |||  ||||  |||| || |||||  | || |||||||||| | |||  |||||||||| ||||||||||||    
T  2058718 tggagtttgttaggcgacaaaccaacacggttactcatgctcttgcaagagaaactacgttattagctaatcccgctgtttattatgatatacccaattg 2058817  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||| ||| ||||||||||||||    
T  2058818 tattgaaactcttattatcaattaaatgttataagca 2058854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 20661203 - 20661339
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||| ||||||  ||   ||| |||||  |||| || |||||  |||| ||| |||||||| |||  || |||||||  |||||||||||    
T  20661203 tggagtttgttaggtgacaagttaacagggttgctcatgctcttgcaagagacaccacgttactagctagtcccgctgtctattatgacatacccaattg 20661302  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    |||||||||||  ||||| ||||||||| ||||||||    
T  20661303 tattgaatctttgattatcaatgaaatgctataagca 20661339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 27268018 - 27267912
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||| ||||||| || | ||| ||||| || || || ||||| ||||| ||| ||| |||| || | ||||||||||  |||||||||||    
T  27268018 tggagtttgttaggtgacaagctaacgaggttgctcatacacttgcaagagaagccacgttactagttagtcccattgtttattatgaaatacccaattg 27267919  T
Q  128 tattgaa 134  Q
    |||||||    
T  27267918 tattgaa 27267912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 11502332 - 11502389
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccac 85  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||| || ||||| |||||    
T  11502332 tggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagagaagccac 11502389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 164
Target Start/End: Original strand, 23379917 - 23380014
Alignment:
Q  67 ctctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattgtattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||||| | ||||||| |||||||| |||  ||||||| |   |||||||||||||||||| ||   ||||| ||||||||||||||||||    
T  23379917 ctctcgcaagagaagtcacattactagctagttccgctgtttattttaaaatacccaattgtattgaaactattattattaatgaaatgttataagca 23380014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 44886305 - 44886438
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||| ||| | ||| |||||  | || || ||||| ||||| || ||||||| | ||    ||||||||| ||||||| | ||    
T  44886305 tggagtttgttaggcgacaagtcaacgcggttgctcatgcacttgcaagagaagccacgttcttagctaatcccactatttattatgatatacccgaatg 44886404  T
Q  128 tattgaatcttcaattataaatgaaatgttataa 161  Q
    ||||||||| | |||||| ||||||||| |||||    
T  44886405 tattgaatccttaattatcaatgaaatgctataa 44886438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 10973678 - 10973634
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcg 72  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||    
T  10973678 tggagtttgttcggcgacaagctaatgtggtggctcacactctcg 10973634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 2973461 - 2973405
Alignment:
Q  116 tatacccaattgtattgaatcttcaattataaatgaaatgttataagcaccttttct 172  Q
    ||||||||||||||||||| |||  ||||  ||||||||| ||||||||| ||||||    
T  2973461 tatacccaattgtattgaaactttgattactaatgaaatgctataagcactttttct 2973405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 11818573 - 11818437
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||||| || | ||| |||||   ||| ||  |||| ||||| ||| |||||||| ||||  |||||| |   ||||||||||     
T  11818573 tggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagctagtcccgttatttattttcagatacccaatta 11818474  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||| ||||||||| ||||||||    
T  11818473 tattgaacctcttattattaatgaaatgctataagca 11818437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 169
Target Start/End: Original strand, 1058 - 1199
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    |||||||||||||||||||| | |||||||| ||||||| |||  | || || ||||||||  | |||||| |||   |||||| |  ||||||||||||    
T  1058 tggagtttgttaggcgacaaactaatgtggtggctcacaatcttacaagggaagccacatttctcgctagtcccgctatttattttcatatacccaattg 1157  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttt 169  Q
    |||||||| ||  ||||| ||||||||| |||||||||||||    
T  1158 tattgaatgtttgattattaatgaaatgctataagcaccttt 1199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 62618 - 62482
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| ||||| |||||  ||||  ||||  ||||||| |  ||||||||| |||  ||||||| |  ||||| ||||||    
T  62618 tggagtttgttaggcgacaagccaacgtggttgctcattctctttctaggtaggccacttctttagctagtcccgctgtttattttaatatactcaattg 62519  T
Q  128 tattgaatcttcaattataaatgaaatgttataagca 164  Q
    ||||||| ||   ||||| ||||||||| ||||||||    
T  62518 tattgaaactcttattattaatgaaatgctataagca 62482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0789 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 4346 - 4209
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||||||||||||||||||| | ||| |||||  || | ||  || |||||||||  ||||||||| |||   |||| |||| |||||||| |||    
T  4346 tggagtttgttaggcgacaagccaaagaggttgctcatgctattgcacgaaaggccacatctttagctagtcccgccatttaatatgatatacccacttg 4247  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcac 165  Q
    ||||||| ||   ||||| ||||||||| |||||||||    
T  4246 tattgaaactattattatcaatgaaatgctataagcac 4209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 73468 - 73327
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgttatacccaattg 127  Q
    ||||||||| || | ||||||| |||||||| ||| | || |||||  ||||| |||| ||  |||||||| |||| ||||| | |  ||||||||||||    
T  73468 tggagtttgctaagagacaagcaaatgtggttgctgatacactcgcaggagagaccacgtttctagctagtcccgttgtttacttttatatacccaattg 73369  T
Q  128 tattgaatcttcaattataaatgaaatgttataagcaccttt 169  Q
    ||||||| |||  ||||| ||||| ||||||||| |||||||    
T  73368 tattgaaactttgattattaatgatatgttataaacaccttt 73327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 21898 - 21811
Alignment:
Q  81 gccacattattagctagtgccgtagtttattatgttatacccaattgtattgaatcttcaattataaatgaaatgttataagcaccttt 169  Q
    |||| ||| ||||| ||||||||| |||||| |  ||| ||||||||||||||||||   |||||||||||||||||||||||| ||||    
T  21898 gccatatttttagccagtgccgta-tttatttttatatccccaattgtattgaatctcttattataaatgaaatgttataagcatcttt 21811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 1122 - 1167
Alignment:
Q  28 tggagtttgttaggcgacaagccaatgtggtagctcacactctcgc 73  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||||    
T  1122 tggagtttgttcggcgacaagctaatgtggtggctcacactctcgc 1167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 4497 - 4542
Alignment:
Q  119 acccaattgtattgaatcttcaattataaatgaaatgttataagca 164  Q
    |||||| | |||||||||||  ||||||||||||||||||||||||    
T  4497 acccaactatattgaatctttgattataaatgaaatgttataagca 4542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 6043 - 6088
Alignment:
Q  119 acccaattgtattgaatcttcaattataaatgaaatgttataagca 164  Q
    |||||| | |||||||||||  ||||||||||||||||||||||||    
T  6043 acccaactatattgaatctttgattataaatgaaatgttataagca 6088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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