View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9033_low_5 (Length: 376)
Name: NF9033_low_5
Description: NF9033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9033_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 7398759 - 7399110
Alignment:
| Q |
1 |
aacgttttacgacataatgtgccggaaaaatcacaaaaatacaggagttaaccaatgcccaaacagataataaaagtatgaactttcgccttcatccacc |
100 |
Q |
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| T |
7398759 |
aacgttttacgacataatgtgccggaaaaatcacaaaaacacaggagttaatcaatgcccaaacagataataaaagtatgaattttcaccttcatccacc |
7398858 |
T |
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| Q |
101 |
aaaaagaaaaatgcttataagattaactaaccttcatcaacaaagatcttcatgttcaaaagattgcgaacacgagaatcatgaagaactagtatccctt |
200 |
Q |
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| T |
7398859 |
aaaaagaaaaatgcttaaaagattaactaaccttcatcaacaaagatcttcatgttcaaaagattgcggacacgagaatcatgaagaactagtatccctt |
7398958 |
T |
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| Q |
201 |
ctaaaactatgatatctgcagggtgaacctacaagagaccaaaaaggaaaaagaaggccatattgatattatatcaacatattgaatnnnnnnntatgtg |
300 |
Q |
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| T |
7398959 |
ctaaaactatgatatctgcagggtgaacctacaagagaccaaaaaggaaaaagaaggccatattgatattatatcaacatattgcat-aaaaaatatgtg |
7399057 |
T |
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| Q |
301 |
aagtttatatgaacacaataatgcaatgccattacattatatatatgatgcat |
353 |
Q |
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| T |
7399058 |
aagtttatatgaacacaataatgcaatgccattacattatatatatgatgcat |
7399110 |
T |
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