View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9035_high_1 (Length: 572)
Name: NF9035_high_1
Description: NF9035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9035_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 17 - 565
Target Start/End: Original strand, 48943439 - 48943987
Alignment:
| Q |
17 |
agtatgtgtttgtttagttgtttgattggaatttgtacctgcactgattttcatgataaatatatctttgaagttttgtttgatgtttaactgaaatgct |
116 |
Q |
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| T |
48943439 |
agtatgtgtttgtttagttgtttgattggaatttgtacctgcactgattttcatgataaatatatctttgaagttttgtttgatgtttaactgaaatgct |
48943538 |
T |
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| Q |
117 |
ggttttttgtaggtttgcttatgtgagacaggaggatctcttcttctcacagcttactgtgagggaaacattgtctcttgctatagaattacagcttcac |
216 |
Q |
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| T |
48943539 |
ggttttttgtaggtttgcttatgtgagacaggaggatctcttcttctcacagcttactgtgagggaaacgttgtctcttgctatagaattacagcttcac |
48943638 |
T |
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| Q |
217 |
aacatatcttctgccgaagagagggatgaatatgtcaacaatctccttttcaaaacaggcctggtgagtttttctatatggtataatttgtttcagtcgc |
316 |
Q |
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| T |
48943639 |
aacatatcttctgccgaagagagggatgaatatgtcaacaatctccttttcaaaacaggcctggtgagtttttctatatggtataatttgtttcagtcgc |
48943738 |
T |
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| Q |
317 |
aaagtagttgctggtttttaagtagattttttcaacaaacctttatatcttccttgaagattgatgaattttggtccttcaattatgattgactactgct |
416 |
Q |
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| T |
48943739 |
aaagtagttgctggtttttaagtagattttttcaacaaacctttatatcttccttgaagattgatgaattttggtccttcaattatgattgactactgct |
48943838 |
T |
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| Q |
417 |
cttatatctgttttatgccttccatatctgtatgcttgctcgccatcctcccaagttccaaaaatgaaaattactatcaaagttacttgtatgattattt |
516 |
Q |
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| T |
48943839 |
cttatatctgttttatgccttccatatttgcatgcttgctcgccatcctcccaagttccaaaaatgaaaattactatcaaagttacttgtatgattattt |
48943938 |
T |
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| Q |
517 |
ttagctttcctatatcagattcatgattgaaaatttgttagtctcattg |
565 |
Q |
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| T |
48943939 |
ttagctttcctatatcagattcatgattgaaaatttgttagtctcattg |
48943987 |
T |
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