View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9035_high_3 (Length: 339)

Name: NF9035_high_3
Description: NF9035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9035_high_3
NF9035_high_3
[»] chr6 (8 HSPs)
chr6 (17-325)||(13609037-13609345)
chr6 (73-146)||(31560766-31560839)
chr6 (73-146)||(33642559-33642632)
chr6 (73-144)||(9168826-9168897)
chr6 (107-146)||(33412003-33412042)
chr6 (73-144)||(33390124-33390195)
chr6 (73-146)||(33059613-33059686)
chr6 (102-146)||(33273842-33273886)
[»] chr4 (9 HSPs)
chr4 (24-318)||(31244993-31245287)
chr4 (73-146)||(31019838-31019911)
chr4 (73-142)||(31159291-31159360)
chr4 (73-141)||(31029724-31029792)
chr4 (85-146)||(31489647-31489708)
chr4 (51-143)||(31476909-31477001)
chr4 (73-220)||(31496884-31497031)
chr4 (74-143)||(31502054-31502123)
chr4 (98-146)||(31034019-31034067)
[»] chr5 (1 HSPs)
chr5 (73-319)||(17599202-17599447)
[»] chr7 (2 HSPs)
chr7 (137-319)||(14724386-14724567)
chr7 (73-115)||(14724344-14724386)
[»] chr8 (1 HSPs)
chr8 (24-71)||(6472633-6472680)
[»] chr2 (1 HSPs)
chr2 (50-144)||(35054251-35054348)


Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-172; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 13609037 - 13609345
Alignment:
Q  17 cctggcaatatagttgggatgcactcacgagtggaagaattagaaaaccttctgaatttggactcagatgatgatgttcgagttgtagggatttgtggaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609037 cctggcaatatagttgggatgcactcacgagtggaagaattagaaaaccttctgaatttggactcagatgatgatgttcgagttgtagggatttgtggaa 13609136  T
Q  117 tgggcggaataggaaagacaactcttgctaaagctttgtgccctagaatctccaatcaatttgctagatgttgctttattgatgatgtgagtaaaattta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609137 tgggcggaataggaaagacaactcttgctaaagctttgtgccctagaatctccaatcaatttgctagatgttgctttattgatgatgtgagtaaaattta 13609236  T
Q  217 tagaggttatggcccaattgaagtgcagaagcaacttctttgtcaaactctaaatgaagataatctccagatatggaatcattctatgggatctaatttg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609237 tagaggttatggcccaattgaagtgcagaagcaacttctttgtcaaactctaaatgaagataatctccagatatggaatcattctatgggatctaatttg 13609336  T
Q  317 attaaaact 325  Q
    ||| |||||    
T  13609337 attcaaact 13609345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 31560766 - 31560839
Alignment:
Q  73 tttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttgcta 146  Q
    ||||||||| ||||||| |||||| ||| |||| |||||||||||||| |||||||| |||||| | |||||||    
T  31560766 tttggactcggatgatggtgttcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgcta 31560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 33642559 - 33642632
Alignment:
Q  73 tttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttgcta 146  Q
    ||||||||||| ||||| |||||| | | |||| |||||||||||||| |||||||| |||||||| |||||||    
T  33642559 tttggactcagttgatggtgttcgtgctataggaatttgtggaatgggaggaatagggaagacaacccttgcta 33642632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 9168897 - 9168826
Alignment:
Q  73 tttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttgc 144  Q
    ||||||||||  ||||| |||||| | | |||| |||||||||||||| |||||||| ||||||||||||||    
T  9168897 tttggactcaattgatggtgttcgtgctataggaatttgtggaatgggaggaatagggaagacaactcttgc 9168826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 33412042 - 33412003
Alignment:
Q  107 atttgtggaatgggcggaataggaaagacaactcttgcta 146  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  33412042 atttgtggaatgggcggaataggaaagacaacccttgcta 33412003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 33390195 - 33390124
Alignment:
Q  73 tttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttgc 144  Q
    ||||||||||| ||||| |||||  | | |||| |||||||||||||| |||||||| |||||||| |||||    
T  33390195 tttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgc 33390124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 33059686 - 33059613
Alignment:
Q  73 tttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttgcta 146  Q
    |||| |||||| ||||| |||||| | | |||| |||||||||||||| |||||||| || ||||| |||||||    
T  33059686 tttgaactcagttgatggtgttcgtgctataggaatttgtggaatgggaggaatagggaaaacaacccttgcta 33059613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 33273886 - 33273842
Alignment:
Q  102 tagggatttgtggaatgggcggaataggaaagacaactcttgcta 146  Q
    |||| |||||||||||||| |||||||| |||||||| |||||||    
T  33273886 taggaatttgtggaatgggaggaatagggaagacaacccttgcta 33273842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 24 - 318
Target Start/End: Original strand, 31244993 - 31245287
Alignment:
Q  24 atatagttgggatgcactcacgagtggaagaattagaaaaccttctgaatttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcgg 123  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| ||| | ||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  31244993 atatagttgggatgcactcacgagtcgaagaattagaaaagcttttgattatggactcagatgatgatgttcgagtggtagggatttgtggaatgggtgg 31245092  T
Q  124 aataggaaagacaactcttgctaaagctttgtgccctagaatctccaatcaatttgctagatgttgctttattgatgatgtgagtaaaatttatagaggt 223  Q
    |||||| ||||| ||||||||||  |||||||    ||||||||| |||||||||| |   || ||||||||||| ||||| |||||||||||  |||      
T  31245093 aatagggaagactactcttgctactgctttgtatgatagaatctctaatcaatttgatgcttgctgctttattgaggatgtaagtaaaatttacggagac 31245192  T
Q  224 tatggcccaattgaagtgcagaagcaacttctttgtcaaactctaaatgaagataatctccagatatggaatcattctatgggatctaatttgat 318  Q
     ||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||  |||| ||||||| ||||    
T  31245193 catggcccgattggagtgcaaaagcaacttctttgtcaaactctaaatgaagaaaatcttcagatatgcaatcttttcatggcatctaatctgat 31245287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 31019911 - 31019838
Alignment:
Q  73 tttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttgcta 146  Q
    ||||||||| | |||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||||| ||||    
T  31019911 tttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctggcta 31019838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 31159360 - 31159291
Alignment:
Q  73 tttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactctt 142  Q
    ||||||||| | |||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||||||    
T  31159360 tttggactccgttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctt 31159291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 31029792 - 31029724
Alignment:
Q  73 tttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactct 141  Q
    ||||||||| | |||||||||||| |||||||| |||||||| ||||| |||||||| |||||||||||    
T  31029792 tttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactct 31029724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 31489647 - 31489708
Alignment:
Q  85 tgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttgcta 146  Q
    |||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||||| ||||    
T  31489647 tgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctggcta 31489708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 143
Target Start/End: Original strand, 31476909 - 31477001
Alignment:
Q  51 aagaattagaaaaccttctgaatttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttg 143  Q
    ||||||||||||| ||| |   ||||||||| | |||||||||||  |||||||| |||||||| ||||| |||||||| |||||||| ||||    
T  31476909 aagaattagaaaagcttttacttttggactctgttgatgatgttcatgttgtaggaatttgtgggatgggtggaatagggaagacaacccttg 31477001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 220
Target Start/End: Original strand, 31496884 - 31497031
Alignment:
Q  73 tttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttgctaaagctttgtgccctagaatctccaat 172  Q
    ||||||||| | | |||||| ||| ||  |||| |||||||| ||||| |||||||| ||||| || |||||||  |||||||   ||| |||||| |||    
T  31496884 tttggactcggttaatgatggtcgtgtcataggaatttgtgggatgggaggaatagggaagactacccttgctactgctttgtatgctaaaatctctaat 31496983  T
Q  173 caatttgctagatgttgctttattgatgatgtgagtaaaatttataga 220  Q
    ||||||| |  ||| || |||||||||||||| || ||||||| ||||    
T  31496984 caatttgatgcatgatgttttattgatgatgtaagcaaaatttttaga 31497031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 31502054 - 31502123
Alignment:
Q  74 ttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttg 143  Q
    |||||||| | ||||||||||| || |||||| || ||||| ||||| |||||||| |||||||| ||||    
T  31502054 ttggactctgttgatgatgttcaagctgtaggaatctgtgggatgggtggaatagggaagacaacccttg 31502123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 31034067 - 31034019
Alignment:
Q  98 gttgtagggatttgtggaatgggcggaataggaaagacaactcttgcta 146  Q
    |||||||| |||| ||||||||| |||||||||||||| ||||| ||||    
T  31034067 gttgtaggaatttatggaatgggaggaataggaaagacgactctagcta 31034019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 73 - 319
Target Start/End: Complemental strand, 17599447 - 17599202
Alignment:
Q  73 tttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttgctaaagctttgtgccctagaatctccaat 172  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||| |  ||||||| ||| | ||||||| ||| |||||||   |||||||||  |||    
T  17599447 tttggactcagacaatgatgttcgagctgtagggatttgtggaatgagttgaatagggaaggctactcttgttaatgctttgtatgctagaatctgtaat 17599348  T
Q  173 caatttgctagatgttgctttattgatgatgtgagtaaaatttatagaggttatggcccaattgaagtgcagaagcaacttctttgtcaaactctaaatg 272  Q
    ||||||| | | |  |||||||| || ||||| |||||||||||| |||  ||||||||||  |||||||| ||| ||||||||||||||||||||||||    
T  17599347 caatttg-ttgcttgtgctttatcgacgatgtaagtaaaatttatggagactatggcccaaccgaagtgcaaaagaaacttctttgtcaaactctaaatg 17599249  T
Q  273 aagataatctccagatatggaatcattctatgggatctaatttgatt 319  Q
    |||| ||||| |||||||| |||| ||||||||||||||||||||||    
T  17599248 aagaaaatcttcagatatgcaatctttctatgggatctaatttgatt 17599202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 137 - 319
Target Start/End: Original strand, 14724386 - 14724567
Alignment:
Q  137 actcttgctaaagctttgtgccctagaatctccaatcaatttgctagatgttgctttattgatgatgtgagtaaaatttatagaggttatggcccaattg 236  Q
    ||||||| ||| |||||||   |||||||||| |||||||||| |   ||| ||||||| || |||||||||||||||||| |||  ||||||||||  |    
T  14724386 actcttgttaatgctttgtatgctagaatctctaatcaatttgatgcttgt-gctttatcgacgatgtgagtaaaatttatggagactatggcccaaccg 14724484  T
Q  237 aagtgcagaagcaacttctttgtcaaactctaaatgaagataatctccagatatggaatcattctatgggatctaatttgatt 319  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||| |||| ||||||||||||||||||||||    
T  14724485 aagtgcaaaagcaacttctttgtcaaactctaaacgaagaaaatcttcagatatgcaatctttctatgggatctaatttgatt 14724567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 14724344 - 14724386
Alignment:
Q  73 tttggactcagatgatgatgttcgagttgtagggatttgtgga 115  Q
    ||||||||||||  |||||||||||| ||||||||||||||||    
T  14724344 tttggactcagacaatgatgttcgagctgtagggatttgtgga 14724386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 6472680 - 6472633
Alignment:
Q  24 atatagttgggatgcactcacgagtggaagaattagaaaaccttctga 71  Q
    ||||||||||||||||||||| ||||||||||||| ||||| ||||||    
T  6472680 atatagttgggatgcactcacaagtggaagaattacaaaactttctga 6472633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 35054348 - 35054251
Alignment:
Q  50 gaagaattagaaaaccttctgaatttggactcagatgatgatg---ttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttgc 144  Q
    |||||||||||||  ||| |||| ||   ||||||||||||||   ||||||||||||| ||||| || ||||  ||||| |||||||||||||||||    
T  35054348 gaagaattagaaagtcttttgaaattaagctcagatgatgatgaacttcgagttgtaggtatttgggggatggctggaatcggaaagacaactcttgc 35054251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University