View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9035_low_1 (Length: 993)
Name: NF9035_low_1
Description: NF9035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9035_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 4e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 744 - 978
Target Start/End: Complemental strand, 26642734 - 26642500
Alignment:
| Q |
744 |
gaaaagttgtaattaaattaattcccatgcctttatcat--gtcatactaagaaagaagttaattatatgagaatgaaatgtttgtgttcaggtaattgc |
841 |
Q |
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| T |
26642734 |
gaaaagttgtaattaaattaatttctatgcctttatcatatgtcatacttataaagaagttaatcatatgagaaagaaatgt--gtgttcaggtaattgc |
26642637 |
T |
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| Q |
842 |
tggaattgatgtcgcagtgagatcaatgaaagtcggtggtattcgtagagtcgtcatacctccatcacttgggtatcagaacacatcacaggaacctatc |
941 |
Q |
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| T |
26642636 |
tggaattgatgtggcagtgcgatcaatgaaagtcggtggtattcgtagagtcgtcatacctccatcacttgggtatcagaacacatcacaggaacctatc |
26642537 |
T |
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| Q |
942 |
ccgcctaatgtaagaatccttttatgatccagaatta |
978 |
Q |
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| T |
26642536 |
ccacctaatgtaagaatccttttatgatccagaatta |
26642500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 129 - 450
Target Start/End: Complemental strand, 26643078 - 26642770
Alignment:
| Q |
129 |
tgttttgtcttgctttgttggtagagtatgagaatttgtaggnnnnnnnatttatata-taattcagtggataggtaaggtgtgtaagtaactattttac |
227 |
Q |
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| T |
26643078 |
tgttttgttttgctttgttggtagagtatgagaatttgtaggatttat-atttatagactaatttaattgataggtaatgtgtgtaagtatttattttac |
26642980 |
T |
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| Q |
228 |
attattacttatttttcattgtgactgttatgattttagtaaatgttgttacattgaaggttgagattcattactatggtagacttgcagcaaaacaagg |
327 |
Q |
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| T |
26642979 |
attatta-------ttcatt---------atgattttagtaaatgtttttatattgaaggttgagattcattactatggtagacttgcagcaaaacaagg |
26642896 |
T |
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| Q |
328 |
atggcgttttgattcaacctatgaccacaaagatgagaatggtgatcctaatccttttgtctttgtccttggctctggtaaggtaa--gcttaattataa |
425 |
Q |
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| T |
26642895 |
atggcgttttgattcaacctatgaccacaaagatgagaatggtgatcctaatccttttgtctttgtccttggctctggtaaggtaaatgcttgattataa |
26642796 |
T |
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| Q |
426 |
ccagcaaa-ttggattggcgtttgac |
450 |
Q |
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| T |
26642795 |
ccagcaaatttggattggcttttgac |
26642770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 26643123 - 26643093
Alignment:
| Q |
18 |
agatggagaccaggtataattctctccttta |
48 |
Q |
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| T |
26643123 |
agatggagaccaggtataattctctccttta |
26643093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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