View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9035_low_15 (Length: 257)
Name: NF9035_low_15
Description: NF9035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9035_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 28250069 - 28249817
Alignment:
| Q |
1 |
gaaagcgttcgcagaatcatctcagtcttcgttgnnnnnnnnnnnnncacagcggttttcacaccgggagaactcaaacaatcattctccgtccctatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28250069 |
gaaagcgttcgcagaatcatctcagtcttcgttgaaaaagaaaaaaacacagcggttttcacaccgggagaactcaaacaatcattctccgtccctatgc |
28249970 |
T |
|
| Q |
101 |
tgcgtgtggcgaaaaccgtcgatatgtacctcgctgaaatcgccgcgtacggtgaactcagcatctcaaaattcaacggaatcgctgttcttattcctaa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28249969 |
tgcgtgtggcgaaaaccgtcgacatgtacctcgctgaaatcgccgcgtacggtgaactcagcatctcaaaattcaacggaatcgctgttcttattcctaa |
28249870 |
T |
|
| Q |
201 |
acacgcgcgtaaaatcgacgatgatctttaccgcgccgttgatgtccatctca |
253 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
28249869 |
acacgcgcgtaaaatcgacgatgatctttaccgcgccgttgatatctatctca |
28249817 |
T |
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