View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9035_low_16 (Length: 227)

Name: NF9035_low_16
Description: NF9035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9035_low_16
NF9035_low_16
[»] chr7 (3 HSPs)
chr7 (63-211)||(38849648-38849796)
chr7 (84-211)||(18483977-18484104)
chr7 (63-108)||(38844873-38844918)
[»] chr5 (4 HSPs)
chr5 (17-108)||(23968472-23968563)
chr5 (129-211)||(23968398-23968480)
chr5 (114-211)||(42133694-42133791)
chr5 (17-65)||(23974104-23974152)
[»] chr6 (2 HSPs)
chr6 (114-220)||(28521990-28522096)
chr6 (17-65)||(18185262-18185310)
[»] chr1 (3 HSPs)
chr1 (114-211)||(14506912-14507009)
chr1 (17-66)||(39295688-39295737)
chr1 (63-108)||(47704952-47704997)
[»] chr3 (3 HSPs)
chr3 (102-211)||(17482969-17483078)
chr3 (17-65)||(9129947-9129995)
chr3 (17-65)||(9138054-9138102)
[»] chr8 (2 HSPs)
chr8 (84-211)||(21031951-21032072)
chr8 (65-119)||(24742312-24742365)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 38849796 - 38849648
Alignment:
Q  63 ttactttcaatctaatgaaaataagagattcattcattttctctctagtgttaatatggtatcagatttctctctcatgtgagagaagttccgatcctaa 162  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||  || |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38849796 ttactttcattctaatgaaaacaagagattcattcattttctctcttctgataatatggtatcagatttctctctcatgagagagaagttccgatcctaa 38849697  T
Q  163 ccgttttctgttacggttgcttccgccgcaatcttcatcttctacctct 211  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  38849696 ccgttttctgttacggttgtttccgccgcattcttcatcttctacctct 38849648  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 18484104 - 18483977
Alignment:
Q  84 taagagattcattcattttctctcta-gtgttaatatggtatcagatttctctctcatgtgagagaagttccgatcctaaccgttttctgttacggttgc 182  Q
    |||||| ||||||||||| ||||||| ||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  18484104 taagagtttcattcattt-ctctctaagtcataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgt 18484006  T
Q  183 ttccgccgcaatcttcatcttctacctct 211  Q
    |||||||||| ||||| ||||||||||||    
T  18484005 ttccgccgcattcttcttcttctacctct 18483977  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 38844918 - 38844873
Alignment:
Q  63 ttactttcaatctaatgaaaataagagattcattcattttctctct 108  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  38844918 ttactttcattctaatgaaaacaagagattcattcattttctctct 38844873  T

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Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 23968563 - 23968472
Alignment:
Q  17 aatactgatgtatctctctactgtgaaatgagaatttgaaactattttactttcaatctaatgaaaataagagattcattcattttctctct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23968563 aatactgatgtatctctctactgtgaaatgagaatttgaaactattttactttcaatctaatgaaaataagagattcattcattttctctct 23968472  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 23968480 - 23968398
Alignment:
Q  129 tttctctctcatgtgagagaagttccgatcctaaccgttttctgttacggttgcttccgccgcaatcttcatcttctacctct 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23968480 tttctctctcatgtgagagaagttccgatcctaaccgttttctgttacggttgcttccgccgcaatcttcatcttctacctct 23968398  T

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Target: chr5; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 42133694 - 42133791
Alignment:
Q  114 taatatggtatcagatttctctctcatgtgagagaagttccgatcctaaccgttttctgttacggttgcttccgccgcaatcttcatcttctacctct 211  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||    
T  42133694 taatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtttccgccgcattcttcttcttctacctct 42133791  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 23974152 - 23974104
Alignment:
Q  17 aatactgatgtatctctctactgtgaaatgagaatttgaaactatttta 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23974152 aatactgatgtatctctctactgtgaaatgagaatttgaaactatttta 23974104  T

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Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 28522096 - 28521990
Alignment:
Q  114 taatatggtatcagatttctctctcatgtgagagaagttccgatcctaaccgttttctgttacggttgcttccgccgcaatcttcatcttctacctctct 213  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||| |    
T  28522096 taatatggtatcagatttctctctcatgagagagaagttccgatcctaactgttttctgttacggttgtttccgccgcattcttcatcttctacctcttt 28521997  T
Q  214 gcttctc 220  Q
    |||||||    
T  28521996 gcttctc 28521990  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 18185310 - 18185262
Alignment:
Q  17 aatactgatgtatctctctactgtgaaatgagaatttgaaactatttta 65  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  18185310 aatactgatgtatctctctactgtgaaatcagaaattgaaactatttta 18185262  T

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Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 14507009 - 14506912
Alignment:
Q  114 taatatggtatcagatttctctctcatgtgagagaagttccgatcctaaccgttttctgttacggttgcttccgccgcaatcttcatcttctacctct 211  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  14507009 taatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtttccgccgcattcttcatcttctacctct 14506912  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 39295688 - 39295737
Alignment:
Q  17 aatactgatgtatctctctactgtgaaatgagaatttgaaactattttac 66  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  39295688 aatactgatgtatctctctaccgtgaaatcagaatttgaaactattttac 39295737  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 47704997 - 47704952
Alignment:
Q  63 ttactttcaatctaatgaaaataagagattcattcattttctctct 108  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  47704997 ttactttcattctaatgaaaacaagagattcattcattttctctct 47704952  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 17483078 - 17482969
Alignment:
Q  102 tctctctagtgttaatatggtatcagatttctctctcatgtgagagaagttccgatcctaaccgttttctgttacggttgcttccgccgcaatcttcatc 201  Q
    ||||||||||| ||||||||||| |||||||||||||  ||||||||||||  ||||||||| ||||||| ||||||||||||||||  ||||||||||     
T  17483078 tctctctagtgataatatggtattagatttctctctcccgtgagagaagttttgatcctaactgttttctattacggttgcttccgctccaatcttcatt 17482979  T
Q  202 ttctacctct 211  Q
    ||| ||||||    
T  17482978 ttcaacctct 17482969  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 9129995 - 9129947
Alignment:
Q  17 aatactgatgtatctctctactgtgaaatgagaatttgaaactatttta 65  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  9129995 aatactgatgtatctctctactgtcaaatcagaatttgaaactatttta 9129947  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 9138102 - 9138054
Alignment:
Q  17 aatactgatgtatctctctactgtgaaatgagaatttgaaactatttta 65  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  9138102 aatactgatgtatctctctactgtcaaatcagaatttgaaactatttta 9138054  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 21032072 - 21031951
Alignment:
Q  84 taagagattcattcattttctctcta-gtgttaatatggtatcagatttctctctcatgtgagagaagttccgatcctaaccgttttctgttacggttgc 182  Q
    |||||| ||||||||||| ||||||| ||  || ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||      ||||     
T  21032072 taagagtttcattcattt-ctctctaagtcatattatggtatcagatttctctctcatgagagagaagttccgattctaaccgttttct------gttgt 21031980  T
Q  183 ttccgccgcaatcttcatcttctacctct 211  Q
    |||||||||| ||||| ||||||||||||    
T  21031979 ttccgccgcattcttcttcttctacctct 21031951  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 24742365 - 24742312
Alignment:
Q  65 actttcaatctaatgaaaataagagattcattcattttctctctagtgttaatat 119  Q
    ||||||||||||||||| ||| |||||||||||| ||||||||||||| ||||||    
T  24742365 actttcaatctaatgaacatatgagattcattca-tttctctctagtgataatat 24742312  T

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