View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9035_low_2 (Length: 655)

Name: NF9035_low_2
Description: NF9035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9035_low_2
NF9035_low_2
[»] chr1 (11 HSPs)
chr1 (12-368)||(47096945-47097308)
chr1 (622-655)||(49580393-49580426)
chr1 (623-654)||(13014735-13014766)
chr1 (623-654)||(20754792-20754823)
chr1 (625-655)||(20165834-20165864)
chr1 (623-653)||(20754253-20754283)
chr1 (626-655)||(8785786-8785815)
chr1 (627-655)||(15369476-15369504)
chr1 (623-655)||(30926500-30926532)
chr1 (627-655)||(31683335-31683363)
chr1 (627-655)||(45230629-45230657)
[»] chr5 (3 HSPs)
chr5 (428-655)||(39170221-39170448)
chr5 (623-655)||(6258291-6258323)
chr5 (627-655)||(43447434-43447462)
[»] chr2 (6 HSPs)
chr2 (622-655)||(31901176-31901209)
chr2 (627-655)||(14786479-14786507)
chr2 (623-655)||(26648262-26648294)
chr2 (627-655)||(39545799-39545827)
chr2 (623-655)||(40505102-40505134)
chr2 (627-655)||(41246099-41246127)
[»] scaffold0014 (1 HSPs)
scaffold0014 (626-655)||(123530-123559)
[»] chr4 (8 HSPs)
chr4 (622-655)||(43938331-43938364)
chr4 (623-655)||(19327056-19327088)
chr4 (623-655)||(20943294-20943326)
chr4 (627-655)||(27285535-27285563)
chr4 (627-655)||(28426799-28426827)
chr4 (627-655)||(36703887-36703915)
chr4 (627-655)||(49332427-49332455)
chr4 (627-655)||(55811547-55811575)
[»] scaffold0775 (1 HSPs)
scaffold0775 (627-655)||(1306-1334)
[»] scaffold0085 (1 HSPs)
scaffold0085 (627-655)||(39414-39442)
[»] chr8 (5 HSPs)
chr8 (623-655)||(26063798-26063830)
chr8 (623-655)||(28525484-28525516)
chr8 (623-655)||(37967932-37967964)
chr8 (627-655)||(42309438-42309466)
chr8 (627-655)||(45434962-45434990)
[»] chr7 (2 HSPs)
chr7 (623-655)||(30939633-30939665)
chr7 (627-655)||(41298744-41298772)
[»] chr6 (1 HSPs)
chr6 (623-655)||(16465210-16465242)
[»] chr3 (3 HSPs)
chr3 (623-655)||(31311370-31311402)
chr3 (623-655)||(46710223-46710255)
chr3 (623-655)||(54617829-54617861)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 368
Target Start/End: Original strand, 47096945 - 47097308
Alignment:
Q  12 ttggtgttctgttgcttgaaatattattttgcagaaggcacattgagttgcatcaagttgaggatggagcagaaggtggtgatgacatgatacttataga 111  Q
    |||||||  ||||||||||||| |||||||||| |||||||||||||||| ||||| |||| |||||| |||| ||||||||||||||||||||||||||    
T  47096945 ttggtgtcatgttgcttgaaatcttattttgcaaaaggcacattgagttgaatcaaattgaagatggaacagagggtggtgatgacatgatacttataga 47097044  T
Q  112 ttagg------------caaaagaggggaaactaagagacattcttagccatgacatgatgttgaagttgttaacgatttcattaggtttgagagaatga 199  Q
    || ||            ||||||| |||||||||||||||||| ||||  ||||     ||||||||||||||| ||||||| |||||||||||||||||    
T  47097045 ttgggttcaatattgggcaaaagaagggaaactaagagacattgttagtaatga-----tgttgaagttgttaatgatttcaataggtttgagagaatga 47097139  T
Q  200 ctatggttggactgtggtgcttgtgccctaatccaactattaggccatctattgcaaaggtgttgcagatgttggaaggagattctgaagttagtgttcc 299  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47097140 ctatggttggactgtggtgcttgtgtcctaatccaactattaggccatctattgcaaaggtgttgcagatgttggaaggagattctgaagttagtgttcc 47097239  T
Q  300 accattgtttgattggaaaattttgtaaccaattcttgctgtttattttgtatttaatacatgactaat 368  Q
    ||||||||||||| || |||||||||||| |||| ||||| ||  |||||| ||||||||| |||||||    
T  47097240 accattgtttgatgggtaaattttgtaactaatttttgctcttatttttgtgtttaatacaagactaat 47097308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 655
Target Start/End: Complemental strand, 49580426 - 49580393
Alignment:
Q  622 catatatttaagggttaaatatgtttttggtccc 655  Q
    ||||||||||||||||||||||||||||||||||    
T  49580426 catatatttaagggttaaatatgtttttggtccc 49580393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 623 - 654
Target Start/End: Complemental strand, 13014766 - 13014735
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtcc 654  Q
    ||||||||||||||||||||||||||||||||    
T  13014766 atatatttaagggttaaatatgtttttggtcc 13014735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 623 - 654
Target Start/End: Complemental strand, 20754823 - 20754792
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtcc 654  Q
    ||||||||||||||||||||||||||||||||    
T  20754823 atatatttaagggttaaatatgtttttggtcc 20754792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 625 - 655
Target Start/End: Original strand, 20165834 - 20165864
Alignment:
Q  625 atatttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||||    
T  20165834 atatttaagggttaaatatgtttttggtccc 20165864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 653
Target Start/End: Complemental strand, 20754283 - 20754253
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtc 653  Q
    |||||||||||||||||||||||||||||||    
T  20754283 atatatttaagggttaaatatgtttttggtc 20754253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 626 - 655
Target Start/End: Original strand, 8785786 - 8785815
Alignment:
Q  626 tatttaagggttaaatatgtttttggtccc 655  Q
    ||||||||||||||||||||||||||||||    
T  8785786 tatttaagggttaaatatgtttttggtccc 8785815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Complemental strand, 15369504 - 15369476
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  15369504 atttaagggttaaatatgtttttggtccc 15369476  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 655
Target Start/End: Complemental strand, 30926532 - 30926500
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtccc 655  Q
    ||||| |||||||||||||||||||||||||||    
T  30926532 atataattaagggttaaatatgtttttggtccc 30926500  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Complemental strand, 31683363 - 31683335
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  31683363 atttaagggttaaatatgtttttggtccc 31683335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Complemental strand, 45230657 - 45230629
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  45230657 atttaagggttaaatatgtttttggtccc 45230629  T

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Target: chr5 (Bit Score: 147; Significance: 4e-77; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 428 - 655
Target Start/End: Complemental strand, 39170448 - 39170221
Alignment:
Q  428 attgattaatttaattctcaaatgttgctttcattagtgaaattaatccataaaattattaccaaaatataaacttagtgatttttaannnnnnnnnnca 527  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||    
T  39170448 attgattaatttaatcctcaaatgtagctttcattagtgaaattaatccataaaattattaccaaaatataaacttagtgatttttt-tttttcttttca 39170350  T
Q  528 aaatttttgttatgttgagaattataatataatgata-tgcctcatatatttatgaatcaaaatgactatttactccctaagaatagcctggcctcatat 626  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||| | |||||||||||    
T  39170349 aaaattttgttatgttgagaattataatataatgataatgcctcatatatttatgaatgaaaatgactatttacttcctaagaatatcatggcctcatat 39170250  T
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||| ||||||||||||||||||||||    
T  39170249 atttaatggttaaatatgtttttggtccc 39170221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 655
Target Start/End: Complemental strand, 6258323 - 6258291
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtccc 655  Q
    ||||||||||||||||||||| |||||||||||    
T  6258323 atatatttaagggttaaatatatttttggtccc 6258291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Complemental strand, 43447462 - 43447434
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  43447462 atttaagggttaaatatgtttttggtccc 43447434  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 655
Target Start/End: Complemental strand, 31901209 - 31901176
Alignment:
Q  622 catatatttaagggttaaatatgtttttggtccc 655  Q
    ||||||||||||||||||||||||||||||||||    
T  31901209 catatatttaagggttaaatatgtttttggtccc 31901176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Original strand, 14786479 - 14786507
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  14786479 atttaagggttaaatatgtttttggtccc 14786507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 655
Target Start/End: Original strand, 26648262 - 26648294
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtccc 655  Q
    ||||||||||||||||||||| |||||||||||    
T  26648262 atatatttaagggttaaatatatttttggtccc 26648294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Complemental strand, 39545827 - 39545799
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  39545827 atttaagggttaaatatgtttttggtccc 39545799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 655
Target Start/End: Complemental strand, 40505134 - 40505102
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtccc 655  Q
    |||| ||||||||||||||||||||||||||||    
T  40505134 atatttttaagggttaaatatgtttttggtccc 40505102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Complemental strand, 41246127 - 41246099
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  41246127 atttaagggttaaatatgtttttggtccc 41246099  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 626 - 655
Target Start/End: Complemental strand, 123559 - 123530
Alignment:
Q  626 tatttaagggttaaatatgtttttggtccc 655  Q
    ||||||||||||||||||||||||||||||    
T  123559 tatttaagggttaaatatgtttttggtccc 123530  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 622 - 655
Target Start/End: Complemental strand, 43938364 - 43938331
Alignment:
Q  622 catatatttaagggttaaatatgtttttggtccc 655  Q
    |||||| |||||||||||||||||||||||||||    
T  43938364 catataattaagggttaaatatgtttttggtccc 43938331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 655
Target Start/End: Complemental strand, 19327088 - 19327056
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtccc 655  Q
    |||| ||||||||||||||||||||||||||||    
T  19327088 atatttttaagggttaaatatgtttttggtccc 19327056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 655
Target Start/End: Original strand, 20943294 - 20943326
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||| ||||||||||||||||||||    
T  20943294 atatatttaaggattaaatatgtttttggtccc 20943326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Complemental strand, 27285563 - 27285535
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  27285563 atttaagggttaaatatgtttttggtccc 27285535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Complemental strand, 28426827 - 28426799
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  28426827 atttaagggttaaatatgtttttggtccc 28426799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Complemental strand, 36703915 - 36703887
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  36703915 atttaagggttaaatatgtttttggtccc 36703887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Original strand, 49332427 - 49332455
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  49332427 atttaagggttaaatatgtttttggtccc 49332455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Complemental strand, 55811575 - 55811547
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  55811575 atttaagggttaaatatgtttttggtccc 55811547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0775 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0775
Description:

Target: scaffold0775; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Complemental strand, 1334 - 1306
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  1334 atttaagggttaaatatgtttttggtccc 1306  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Original strand, 39414 - 39442
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  39414 atttaagggttaaatatgtttttggtccc 39442  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 655
Target Start/End: Complemental strand, 26063830 - 26063798
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtccc 655  Q
    ||||||| |||||||||||||||||||||||||    
T  26063830 atatattgaagggttaaatatgtttttggtccc 26063798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 655
Target Start/End: Original strand, 28525484 - 28525516
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtccc 655  Q
    ||||||||| |||||||||||||||||||||||    
T  28525484 atatatttatgggttaaatatgtttttggtccc 28525516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 655
Target Start/End: Complemental strand, 37967964 - 37967932
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtccc 655  Q
    |||| ||||||||||||||||||||||||||||    
T  37967964 atatttttaagggttaaatatgtttttggtccc 37967932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Original strand, 42309438 - 42309466
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  42309438 atttaagggttaaatatgtttttggtccc 42309466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Complemental strand, 45434990 - 45434962
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  45434990 atttaagggttaaatatgtttttggtccc 45434962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 655
Target Start/End: Complemental strand, 30939665 - 30939633
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtccc 655  Q
    ||||||||||||||||||||||||||| |||||    
T  30939665 atatatttaagggttaaatatgtttttagtccc 30939633  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 655
Target Start/End: Complemental strand, 41298772 - 41298744
Alignment:
Q  627 atttaagggttaaatatgtttttggtccc 655  Q
    |||||||||||||||||||||||||||||    
T  41298772 atttaagggttaaatatgtttttggtccc 41298744  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 655
Target Start/End: Complemental strand, 16465242 - 16465210
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtccc 655  Q
    |||||||| ||||||||||||||||||||||||    
T  16465242 atatattttagggttaaatatgtttttggtccc 16465210  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 655
Target Start/End: Complemental strand, 31311402 - 31311370
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtccc 655  Q
    |||||||| ||||||||||||||||||||||||    
T  31311402 atatattttagggttaaatatgtttttggtccc 31311370  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 655
Target Start/End: Original strand, 46710223 - 46710255
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtccc 655  Q
    |||| ||||||||||||||||||||||||||||    
T  46710223 atatttttaagggttaaatatgtttttggtccc 46710255  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 655
Target Start/End: Complemental strand, 54617861 - 54617829
Alignment:
Q  623 atatatttaagggttaaatatgtttttggtccc 655  Q
    ||||| |||||||||||||||||||||||||||    
T  54617861 atataattaagggttaaatatgtttttggtccc 54617829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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