View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9035_low_5 (Length: 550)
Name: NF9035_low_5
Description: NF9035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9035_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 129 - 523
Target Start/End: Complemental strand, 7021855 - 7021461
Alignment:
| Q |
129 |
atcaataactttcaataactctttacaaaaagcgaatcaaatcaatccatcaattgaatcaacttatattatactattgatgatcatgtatacaaagctt |
228 |
Q |
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| T |
7021855 |
atcaataactttcaataactctttacaaaaagcgaatcaaatcaatccatcaattgaatcaacttatattatactattgatgatcatgtatacaaagctt |
7021756 |
T |
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| Q |
229 |
caaacaatttaaatatttattagaatatagttgatcgtatacaaaacttcaaacagtttagatggttgttggtatatgtttacatatgttttaaatagca |
328 |
Q |
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| T |
7021755 |
caaacaatttaaatatttattggaatatagttgatcgcatacaaaacttcaaacagtttagatggttgttggtatatgtttacatatgttttaaatagca |
7021656 |
T |
|
| Q |
329 |
tattgtacgttaaaataagatgatggaataaaatatcatatagtttttgaaattctattaatatatatagatttgatctacttaacgaaaactttcaatt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7021655 |
tattgtacgttaaaataagatgatggaataaaatatcatatagtttttgaaattctattaatatatatagatttgatctacttaacgaaaactttcaatt |
7021556 |
T |
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| Q |
429 |
gttgtttaattttccgtttacaaagagtcattagaagtgaatggggaaggtctcaatcctgttgctattctagtatttgatgaaatgaagtgtaa |
523 |
Q |
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| T |
7021555 |
gttgtttaattttccgtttacaaagagtcattagaagtgaatggggaaggtctcaatcctgttgctattctagtatttgatgaaatgaagtgtaa |
7021461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 7021986 - 7021911
Alignment:
| Q |
53 |
taatgaaatctattttttgcttttcaaacaaacaaaagaagacaataacgtgcgttacgtatatgacatgtacagt |
128 |
Q |
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| T |
7021986 |
taatgaaatctattttttgtttttcaaacaaacaaaagaagacaataacgtgcgttacgtatatgacatgtacagt |
7021911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 12391099 - 12391030
Alignment:
| Q |
307 |
tttacatatgttttaaatagcatattgtacgttaaaataagatgatggaataaaatatcatatagttttt |
376 |
Q |
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| T |
12391099 |
tttacatatgttataactagtgtattgtatgttaaaataagatgatgtgattaaatatcatatagttttt |
12391030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 12407216 - 12407147
Alignment:
| Q |
307 |
tttacatatgttttaaatagcatattgtacgttaaaataagatgatggaataaaatatcatatagttttt |
376 |
Q |
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| T |
12407216 |
tttacatatgttataactagtgtattgtatgttaaaataagatgatgtgattaaatatcatatagttttt |
12407147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 10541831 - 10541734
Alignment:
| Q |
136 |
actttcaataactctttacaaaaagcgaatcaaatcaatccatcaattgaatcaacttatattatactattgatgatcatgtatacaaagcttcaaacaa |
235 |
Q |
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||||||||||||||||| | || |||||| ||||||||||| | ||||||||| ||||||| | | |||||||||||| ||| ||| ||||||||| |
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| T |
10541831 |
actttcaataactctttgtagaaggcgaattaaatcaatccaactattgaatcatcttatatca---tgttgatgatcatgcatataaaaattcaaacaa |
10541735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 10460190 - 10460149
Alignment:
| Q |
205 |
ttgatgatcatgtatacaaagcttcaaacaatttaaatattt |
246 |
Q |
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| T |
10460190 |
ttgatgatcatgtatacaaaaattcaaacaatttaaacattt |
10460149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 49645323 - 49645279
Alignment:
| Q |
307 |
tttacatatgttttaaatagcatattgtacgttaaaataagatga |
351 |
Q |
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|||| |||||||||||||||| |||| | |||||||||||||||| |
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| T |
49645323 |
tttatatatgttttaaatagcttattattcgttaaaataagatga |
49645279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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