View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9035_low_6 (Length: 534)
Name: NF9035_low_6
Description: NF9035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9035_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 188 - 522
Target Start/End: Complemental strand, 5028162 - 5027826
Alignment:
| Q |
188 |
ttgaactctatcactcaattaaaatataataaataatcatttaattctatgaatggagtccactaaaataaaatacaaaatctgtgttgccatgccaaac |
287 |
Q |
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| T |
5028162 |
ttgaactctatcactcaattaaaatataataaataatcatttaattctatgaatct-gtccactaaaataaaatacaaaatctgtgttgccatgccaaac |
5028064 |
T |
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| Q |
288 |
accaatccattttgcctcacaattttgtt-gtctacagaaaagaataccatctctttttatattctaccactagtaatagtttatttaatcgacaaaact |
386 |
Q |
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| T |
5028063 |
accaatccattttgcctcacgattttgttcgtctacaaaaaagaataccatctctttttatattctaccactagtactagtttatttaatcgacaaaact |
5027964 |
T |
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| Q |
387 |
actggtactagttttttgtattctaaaataaatagcaaatattaac--agnnnnnnntgtatggtcaaagggaccccttagttgactatcaacaatcaaa |
484 |
Q |
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| T |
5027963 |
actagtactagttttttgtattctaaaataaatagcaaatattaacaaagaaaaaaatgtatggtcaaagggaccccttagttgattatcaacaatcaaa |
5027864 |
T |
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| Q |
485 |
tttcaaatccaaccacgaatttcctacatcaacaccaa |
522 |
Q |
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| T |
5027863 |
ttccaaatccaaccacgaatttcctacatcaaccccaa |
5027826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 5028300 - 5028154
Alignment:
| Q |
22 |
atcaacctttaaaaataaaataacaataatttggccaatcaaatataacacgtttcatattcaatacaaaagacacctattaaatacaaaagatatttac |
121 |
Q |
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| T |
5028300 |
atcaacctttaaaaataaagtaacaataatttggccaatcaaatatgatacgtttcatattcaatacaaaagacacctattaaatacaaaagatatttac |
5028201 |
T |
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| Q |
122 |
cattttaataataaaatactctaaaatctatgaacaaattgaactct |
168 |
Q |
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| T |
5028200 |
cattttaataataaaatactctaaaatctatgaacaaattgaactct |
5028154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 2773578 - 2773522
Alignment:
| Q |
75 |
ttcatattcaatacaaaagacacctattaaatacaaaagatatttaccattttaata |
131 |
Q |
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| T |
2773578 |
ttcatattaaatacaaaagatacattttaaatacaaaagatatttactattctaata |
2773522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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