View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9035_low_8 (Length: 485)
Name: NF9035_low_8
Description: NF9035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9035_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 17108395 - 17107923
Alignment:
| Q |
1 |
actaaagtcaagataagacaatttcaccagt----gtaaattcacaggcagctcttccaaatactcacaatccttcaccttcaatgtttgcaagtaaagg |
96 |
Q |
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| T |
17108395 |
actaaagtcaagataagacaatttcaccagtttgtgtaaattcacaggcagctcttccaaatactcacaatccttcaccttcaatgtttgcaagtaaagg |
17108296 |
T |
|
| Q |
97 |
agggagcataaagaatccggcaaatttcttatcccagtccgggaaaggtcgagatgacggaggtgtataagatttcttactgtatccggcaactccacca |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17108295 |
agggagcataaagaatccggcaaatttcttatcccagtccgggaaaggtcgagatgacggaggtgtataagatttcttactgtatccggcaactccacca |
17108196 |
T |
|
| Q |
197 |
tatccatgtatccgcacaatgacaatacacgcaacaacttacacttcaagaacaactttggaagctccaatgacgtcaagggcgacaaccaacgatgttg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17108195 |
tatccatgtatccgcacaatgacaatacacgcaacaacttacatttcaagaacaactttggaagctccaatgacgtcaagggcgacaaccaacgatgttg |
17108096 |
T |
|
| Q |
297 |
gtaagaattcatagacagtggtataaatgtccacaacttattatctgtatataaggtctcgaacccttttgaagatccaattttatcacataaaaatgaa |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17108095 |
gtaagaattcatagacagtggtataaatgtccacaacttattatctgtatataaggtctcgaacccttttgaagatccaattttatcacatacaaatgaa |
17107996 |
T |
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| Q |
397 |
aaatgacgagttatccctgatatatttttccctctttcggctcccaatgttaagcaaaaatccccaaacacag |
469 |
Q |
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| T |
17107995 |
aaatgacgagttatccctgatatatttttccctctttcggctcccaatgttaagcaaaaatccccaaacacag |
17107923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 17028560 - 17028519
Alignment:
| Q |
369 |
agatccaattttatcacataaaaatgaaaaatgacgagttat |
410 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||||||||| |
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| T |
17028560 |
agatcctatttcatcacataaaaatgaaaaatgacgagttat |
17028519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 17046898 - 17046857
Alignment:
| Q |
369 |
agatccaattttatcacataaaaatgaaaaatgacgagttat |
410 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||| |
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| T |
17046898 |
agatcctatttcatcacataaaaatgaaaaatgacgagttat |
17046857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 17094391 - 17094350
Alignment:
| Q |
369 |
agatccaattttatcacataaaaatgaaaaatgacgagttat |
410 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||| |
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| T |
17094391 |
agatcctatttcatcacataaaaatgaaaaatgacgagttat |
17094350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 410
Target Start/End: Complemental strand, 16976676 - 16976647
Alignment:
| Q |
381 |
atcacataaaaatgaaaaatgacgagttat |
410 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16976676 |
atcacataaaaatgaaaaatgacgagttat |
16976647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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