View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9035_low_9 (Length: 449)
Name: NF9035_low_9
Description: NF9035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9035_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 13 - 434
Target Start/End: Original strand, 39561693 - 39562107
Alignment:
| Q |
13 |
attattctcagttcacaactgaagtttgcatatgcaggtgttttcgatggatccattgaaaatggagagtaagaatctatcttgttatgtttgtagctca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39561693 |
attattctcagttcacaactgaagtttgcatatgcaggtgttttcgatggatccattgaaaatggagagtaagaatctatcttgttatgtttgtagctca |
39561792 |
T |
|
| Q |
113 |
aaatagagagatgaaattgagattaaagaatatttttaatgtgttggtttgagtttgagttgttgtatgtgatgcattatatagtgtggaaaaggtaaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39561793 |
aaatagagagatgaaattgagattaaagaatatttttaatgtgttggtttgagtttgagttgttgtatgtgatgcattatatagtgtggaaaaggtaaat |
39561892 |
T |
|
| Q |
213 |
tggaaatgctttccaggaagctgctcttatccattatccttgagcactaacatagtgtatagtataaaattgatccaatatctcagttgtgctttttgtg |
312 |
Q |
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| T |
39561893 |
tggaaatgctttccaggaagctgctc-------ttatccttgagcactaacatagtgtatagtataaaattgatccaatatctcagttgtgccttttgtg |
39561985 |
T |
|
| Q |
313 |
aatatattaataccatcttaatcttaaaccatgcacgtgagattgtgttgaagattatatcttattaaagaaaacctttagaatctcgaaaggctggatt |
412 |
Q |
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| T |
39561986 |
aatatattaataccatcttaatcttaaaccatgcacgtgagattgtgttgaagattatatcttattaaagaaaacctttagaatctcgaaaggctggatt |
39562085 |
T |
|
| Q |
413 |
ttccaatttggctcttgttagt |
434 |
Q |
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| T |
39562086 |
ttccaatttggctcttgttagt |
39562107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 154 - 432
Target Start/End: Original strand, 39566511 - 39566784
Alignment:
| Q |
154 |
tgttggtttgagtttgagttgt--tgtatgtgatgcattatatagtgtggaaaaggtaaattggaaatgctttccaggaagctgctcttatccattatcc |
251 |
Q |
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|||| ||||||||||||||||| ||||| ||||| ||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |
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| T |
39566511 |
tgtttgtttgagtttgagttgtgttgtatatgatgtattatatagtgtgcaaaaagtaaactggaaatgctttccaggaagctgctcttattc------- |
39566603 |
T |
|
| Q |
252 |
ttgagcactaacatagtgtatagtataaaattgatccaatatctcagttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgtg |
351 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
39566604 |
ttgagcactaacatagtgtattatataaaattgatccaatatctaagttgtgctctttgtgaatatattaataccatcttaatcttaaactatgcacatg |
39566703 |
T |
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| Q |
352 |
agattgtgttgaagattatatcttattaaagaaaacctttagaatctcgaaaggctggattttccaatttggctcttgtta |
432 |
Q |
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| T |
39566704 |
agattgtgtagaagattatatcttattaaagaaaacctttagaatctcgaaaggctagattttccaatttggctcttgtta |
39566784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 188 - 386
Target Start/End: Original strand, 39560558 - 39560749
Alignment:
| Q |
188 |
attatatagtgtggaaaaggtaaattggaaatgctttccaggaagctgctcttatccattatccttgagcactaacatagtgtatagtataaaattgatc |
287 |
Q |
| |
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||||| |||||||||||| |||||| |||||||||||||| |||| || ||||||| |||| |||||||||||| ||| |||||||||||||| |
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| T |
39560558 |
attatgtagtgtggaaaaagtaaataggaaatgctttccatgaagttgatcttatct-------ttgaacactaacatagtatattgtataaaattgatc |
39560650 |
T |
|
| Q |
288 |
caatatctcagttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgtgagattgtgttgaagattatatcttattaaagaaaa |
386 |
Q |
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|| |||||||||||||| |||||||||||||||||||||| |||| |||| || ||||||| | ||||| ||||||||||||||| ||||||||||||| |
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| T |
39560651 |
cagtatctcagttgtgccttttgtgaatatattaataccaacttattcttgaatcatgcacatcagattatgttgaagattatatattattaaagaaaa |
39560749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 155 - 434
Target Start/End: Original strand, 39572030 - 39572297
Alignment:
| Q |
155 |
gttggtttgagtttgagttgttgtatgtgatgcattatatagtgtggaaaaggtaaattggaaatgctttccaggaagctgctcttatccattatccttg |
254 |
Q |
| |
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|||||||||||||||| |||||||| |||||| |||||||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
39572030 |
gttggtttgagtttgaattgttgtaggtgatgtattatatagtgttgaaaaagtaaattggaaatgctttacaggaagctgctc-------ttatccttg |
39572122 |
T |
|
| Q |
255 |
agcactaacatagtgtatagtataaaattgatccaatatctcagttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgtgaga |
354 |
Q |
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| T |
39572123 |
aacactaa------------tataaaatttgtccagtatctcagttgttcattttgcgaatatattactaccaacttaatcttatatcatgcacatgaga |
39572210 |
T |
|
| Q |
355 |
ttgtgttgaagattatatcttattaaagaaaacc-------tttagaatctcgaaaggctggattttccaatttggctcttgttagt |
434 |
Q |
| |
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|||||||||| ||||||||||||| |||||||| |||||||||| |||||||| ||||||||||||| || |||||||| |
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| T |
39572211 |
ttgtgttgaatattatatcttattgtagaaaacctttagagtttagaatcttgaaaggctagattttccaattttcctattgttagt |
39572297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 291 - 429
Target Start/End: Complemental strand, 39584755 - 39584617
Alignment:
| Q |
291 |
tatctcagttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgtgagattgtgttgaagattatatcttattaaagaaaacctt |
390 |
Q |
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|||||||||||||| |||||||||||||| | |||| |||||||||||| ||||| | | |||||||||| |||||||||| ||| ||||||||||||| |
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| T |
39584755 |
tatctcagttgtgccttttgtgaatatatggacaccaacttaatcttaaatcatgcgcattagattgtgttcaagattatattttactaaagaaaacctt |
39584656 |
T |
|
| Q |
391 |
tagaatctcgaaaggctggattttccaatttggctcttg |
429 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||||| |
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| T |
39584655 |
gtaaatctcgaaaggctagattttctaatttggctcttg |
39584617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 278 - 429
Target Start/End: Complemental strand, 39581146 - 39580986
Alignment:
| Q |
278 |
aaaattgatccaatatctcagttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgt-------gagattgtgttgaagattat |
370 |
Q |
| |
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|||||||||| | |||||||||||||||||||||| |||||||||||||| |||||| || || ||||||| | ||||||||||||||||| || |
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| T |
39581146 |
aaaattgatctagtatctcagttgtgctttttgtgcatatattaataccaacttaatattgaatcatgcacattgcacatgagattgtgttgaagatcat |
39581047 |
T |
|
| Q |
371 |
at--cttattaaagaaaacctttagaatctcgaaaggctggattttccaatttggctcttg |
429 |
Q |
| |
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|| |||||||||||||| ||||||||||||||||||| |||||| |||||| ||||||| |
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| T |
39581046 |
ataccttattaaagaaaaagtttagaatctcgaaaggctagattttacaattttgctcttg |
39580986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 299 - 430
Target Start/End: Complemental strand, 39574603 - 39574473
Alignment:
| Q |
299 |
ttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgtgagattgtgttgaagattat-atcttattaaagaaaacctttagaatc |
397 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||| ||||||| | ||||||| | |||||| | ||| |||||||||||||| || ||||| |
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|
| T |
39574603 |
ttgtgctttttgtgaatattttaataccaaattaatcttaaa-catgcacatcagattgttctaaagattttaatcatattaaagaaaacc-ttggaatc |
39574506 |
T |
|
| Q |
398 |
tcgaaaggctggattttccaatttggctcttgt |
430 |
Q |
| |
|
| |||||| |||||||||||||| || |||||| |
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|
| T |
39574505 |
tagaaagggtggattttccaattcggatcttgt |
39574473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 39581249 - 39581181
Alignment:
| Q |
159 |
gtttgagtttgagttgttgtatgtgatgcattatatagtgtggaaaaggtaaattggaaatgctttcca |
227 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| |
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|
| T |
39581249 |
gtttgagtttaagttgttgtatgcgatgcattatatagtgtggaaaaagtaatgtggaaatgctttcca |
39581181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 39585049 - 39584987
Alignment:
| Q |
13 |
attattctcagttcacaactgaagtttgcatatgcaggtgttttcgatggatccattgaaaat |
75 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || ||| | | |||||||||||||||||| |
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|
| T |
39585049 |
attattctcagttcacagctgaagtttgcataagctggtatatgggatggatccattgaaaat |
39584987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 39584896 - 39584828
Alignment:
| Q |
159 |
gtttgagtttgagttgttgtatgtgatgcattatatagtgtgga-aaaggtaaattggaaatgctttcc |
226 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| || || ||| |||||||||||||||||||| |
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|
| T |
39584896 |
gtttgagtttgagttgttgctagtgatgtattatatagagttgagaaaagtaaattggaaatgctttcc |
39584828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 39569063 - 39569124
Alignment:
| Q |
13 |
attattctcagttcacaactgaagtttgcatatgcaggtgttttcgatggatccattgaaaa |
74 |
Q |
| |
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|||||||| |||||||| |||||||||||||| |||||| | | |||||||||||||||| |
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|
| T |
39569063 |
attattcttagttcacagctgaagtttgcataagcaggtatatggaatggatccattgaaaa |
39569124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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