View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9036_high_17 (Length: 215)
Name: NF9036_high_17
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9036_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 25376693 - 25376512
Alignment:
| Q |
17 |
agatcagaagatttgaatttgatgaatctttggtgccaaatagcaatgggtttgtttccaagatttggccgtccagaagaaagttcatgaattgagctca |
116 |
Q |
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| T |
25376693 |
agatcagaagatttgaatttgatgaatctttgatgccaaatagcaatgggtttgtttccaagatttggccgtccagaagaaagttcatgaattgagctca |
25376594 |
T |
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| Q |
117 |
aagtttcaaacctattatttgcaaattgtgggtcaactgtggaaatttatgatgatgatattgcttctgttttgtgcatatt |
198 |
Q |
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| T |
25376593 |
aagtttcaaacctattcttcgcaaattgtgggccagctgtgggaatttatgatgatgatattgcttttgttttgtgcatatt |
25376512 |
T |
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Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 41422699 - 41422867
Alignment:
| Q |
19 |
atcagaagatttgaatttgatgaatctttggtgccaaatagcaatgggtttgtttccaagatttggccgtccagaagaaagttcatgaattgagctcaaa |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
41422699 |
atcagaagatttgaatttgatgaatctttgatgccaaataacaatgggtttgtttccaagatatggccgttcagaagaaagttcatgaattgagctcaaa |
41422798 |
T |
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| Q |
119 |
gtttcaaacctattatttgcaaattgtgggtcaactgtggaaatttatgatgatgatattgcttctgttttgtgcatatt |
198 |
Q |
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| T |
41422799 |
gttttaaacctattctttacaaattgtggg-----------aatttatgatgatgatattgcttctgttttgtgtatatt |
41422867 |
T |
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