View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9036_high_6 (Length: 501)
Name: NF9036_high_6
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9036_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 7948328 - 7947833
Alignment:
| Q |
1 |
agttgctccattcttgtgaggagtttaacggattgtgtcgatgttacagcactcctaggtttttccccaagtgggaatacagttgaattctgcaattgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7948328 |
agttgctccattcttgtgaggagtttaacggattgtgtcgatgttacagcactcctaggtttttccccaagtgggaatacagttgaattctgcaattgtg |
7948229 |
T |
|
| Q |
101 |
ctagtgacttagttactgtaagaaataaaacttttctccccaaaaaacaggctggttctacggtagaccacttgaaaattatcgtagagataccaatgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7948228 |
ctagtgacttagttactgtaagaaataaaacttttctccccaaaaaacaggctggttctacggtagaccacttgaaaattatcgtagagataccaatgac |
7948129 |
T |
|
| Q |
201 |
aaccgatgttgctcttggaagtagaaaatcgcagtcatcgttgctgtcataggtgatatggtgacttgattggtgcgtgttctaccaaaacatagaaaaa |
300 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7948128 |
aaccgatgttgatcttggaagtagaaaatcacagtcatcgttgctgtcataggtgatatggtgacttgattggtgcgtgttctaccaaaacatagaaaaa |
7948029 |
T |
|
| Q |
301 |
cgaatatgagttgagttttgttgactcattcgttttcccatatgnnnnnnncgaactagtaccaatcaagtcaccatctcactcatgaagacaaagagga |
400 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
7948028 |
cgaatatgagttgagttttgttggctcattcgttttcccatatgtttttttcgaactagtatcaatcaagtcaccgtctcactcatgaagacaaagagga |
7947929 |
T |
|
| Q |
401 |
ttgtg---ttctgcttccgacaagtactatgagtcatagtttcgggttattttcaagtgttaatccaccttggacacctatctaactggaccacca |
493 |
Q |
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| || |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7947928 |
tcatgagtttctacttccgacaagtaccatgagtcatagtttcgggttattttcaagtgttaatccaccttggacacctatctaactggaccacca |
7947833 |
T |
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