View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9036_high_8 (Length: 487)
Name: NF9036_high_8
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9036_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 47582748 - 47582280
Alignment:
| Q |
1 |
agaaacataacacctagcagaaacttttttcacgaaaagctaacaccctctcctaattgataaaatattgatgaactaattatattttcattagagggac |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582748 |
agaaacataacatctagcagaaacttttttcacgaaaagctaacaccctctcctaattgataaaatattgatgaactaattatattttcattagagggac |
47582649 |
T |
|
| Q |
101 |
aggaaaagattattggtgatttcaattcttgttctcccaagttcttacagaagatatatcttttgctagatatagtaatcatgggttgacagtaatatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582648 |
aggaaaagattattggtgatttcaattcttgttctcccaagttcttacagaagatatatcttttgctagatatagtaatcatgggttgacagtaatatat |
47582549 |
T |
|
| Q |
201 |
ggtatgattacattgatgtcttattatgtcagaaatggtcgtaaaattaaaaaagtgtaaatgagggataatcaaaagtttaaacctggtcgagctgaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582548 |
ggtatgattacattgatgtcttattatgtcagaaatggtcgtaaaattaaaaaagtgtaaatgagggataatcaaaagtttaaacctggtcgagctgaaa |
47582449 |
T |
|
| Q |
301 |
ggcgaggatttgtgggtgggggcagcacccaagaattattgtcgtctgccttgtggaatggatataattcaaatctaacaccacaactgggatataatat |
400 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582448 |
ggcgaggatttgtgggtggaggcagcacccaagaattattgtcgtctgccttgtggaatggatataattcaaatctaacaccacaactgggatataatat |
47582349 |
T |
|
| Q |
401 |
tgtgcctccagattttcctctgcagcaactggttggaacttcagctatggcatcactaagacaccagct |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582348 |
tgtgcctccagattttcctctgcagcaactggttggaacttcagctatggcatcactaagacaccagct |
47582280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 163 - 469
Target Start/End: Complemental strand, 47572901 - 47572582
Alignment:
| Q |
163 |
ttgctagatatagtaatcatgggttgacagtaatatatgg-tatgat------tacattgatgtcttattatgtcagaaatggtcgtaaaattaaaaaag |
255 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||| | |||| ||||||||| ||||| ||||| | |||||||||| ||| |
|
|
| T |
47572901 |
ttgctagatatagtagtcatgggttgacagtaatatatgggtatgatattaacttgattgctgtcttattgtgtcacaaatgttagtaaaattaagaaaa |
47572802 |
T |
|
| Q |
256 |
tgtaaatgagggataatcaaaagtttaaacctggtcgagctgaaaggcgaggatttgtgggtgggggcagca------cccaagaattattgtcgtctgc |
349 |
Q |
| |
|
| || |||| |||| ||||||| ||||||||||| |||||||| |||||| |||| ||||| || || |||||| | ||||| || ||| |
|
|
| T |
47572801 |
tatatatgaaggattttcaaaagcttaaacctggtggagctgaagcacgaggaattgttggtggtggaggcggtggcccccaagcaacattgttgtgtgc |
47572702 |
T |
|
| Q |
350 |
cttgtggaatggatataattcaaatctaacaccacaactgggatataatattgtgcctccagattttcctctgcagcaactggttggaacttcagctatg |
449 |
Q |
| |
|
||||||||| |||| ||| |||||| ||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||| ||| |||||| |
|
|
| T |
47572701 |
cttgtggaaaggatttaagtcaaatttaagaccacaactgggataaaatattgctcctccagattttcctctgcaacaactagttggaatttctgctatg |
47572602 |
T |
|
| Q |
450 |
gcatcactaagacaccagct |
469 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
47572601 |
gcatcgctaagacaccagct |
47572582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 61 - 204
Target Start/End: Complemental strand, 47570847 - 47570697
Alignment:
| Q |
61 |
taaaatattgatgaactaattatattttcattagagggacaggaaaagattattggtgatttcaattcttgttctc------ccaagttcttacagaag- |
153 |
Q |
| |
|
|||||||||| | ||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||| || |||||| |
|
|
| T |
47570847 |
taaaatattgtttaactatttat-ttttcattagagggataggaaaagattattggtgatttcagttcacgttctcaatgtaccaagttattgcagaaga |
47570749 |
T |
|
| Q |
154 |
-atatatcttttgctagatatagtaatcatgggttgacagtaatatatggta |
204 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
47570748 |
tatatatctcttgctagatatagtatccatgggttgacagtgatatatggta |
47570697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 47573269 - 47573217
Alignment:
| Q |
36 |
aaagctaacaccctctcctaattgataaaatattgatgaactaattatattttc |
89 |
Q |
| |
|
|||||||| ||||||||||| || |||||||||||||||||| |||||||||| |
|
|
| T |
47573269 |
aaagctaa-accctctcctagttcttaaaatattgatgaactacttatattttc |
47573217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 47566304 - 47566249
Alignment:
| Q |
61 |
taaaatattgatgaactaattatattttcattagagggacaggaaaagattattggt |
117 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||| |||||| | ||||||||||||||| |
|
|
| T |
47566304 |
taaaatattgattaactatttat-ttttcatttgagggataagaaaagattattggt |
47566249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University