View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9036_low_1 (Length: 751)
Name: NF9036_low_1
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9036_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 1 - 736
Target Start/End: Original strand, 44071886 - 44072623
Alignment:
| Q |
1 |
cacatccaaatccaactcagtttctttgtaggaagaaggaggcatcaaaattacacttgaaccttcccctattcggtttctgccaccgaacatccgtctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44071886 |
cacatccaaatccaactcagtttctttgtaggaagaaggaggcatcaaaattacacttgaaccttcccctattcggtttctgccaccgaacatctgtctg |
44071985 |
T |
|
| Q |
101 |
acacgatcctgttctgcttgagctcacggtagcagtagcaaaatttgaattcgaatgctgcttgacttgcaacgggatgtgactcatgtgaggcaactgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44071986 |
acacgatcctgttctgcttgagctcacggtagcagtagcaaaatttgaattcgaatgctgcttgacttgcaacgggatgtgactcatgtgaggcaactga |
44072085 |
T |
|
| Q |
201 |
ccacattctaatcttcaagcaaattcacttctctatccaagatttgcacactagtttcaatcacattatgccataattttatatttctatgcttccttat |
300 |
Q |
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| T |
44072086 |
ccacattctaatcttcaagcaaattcacttctctatccaagatttgcacactagtttcaatcacattatgccataatttcatatttctatgcttccttat |
44072185 |
T |
|
| Q |
301 |
gctccacataataattgtcattttatttgcattaagttgagataattgcttctaaaaagcgcctttaaattatttgataaatgatttgtgaaattattaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44072186 |
gctccacataataattgtcattttatttgcattaagctgagataattgcttctaagaagcgcctttaaattatttgataaatgatttgtgaaatcattaa |
44072285 |
T |
|
| Q |
401 |
agatggcgtgactttgatttataaaggtaatttatatttagaagagatgattccgaccacttactttgacatatcgctggttgggtatttcaacagccgt |
500 |
Q |
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| T |
44072286 |
agatggcgtgactttgatttataaaggtaatttatacttagaagagatgattctgaccacttactttgacatattgctggttgggtatttcaacagccgt |
44072385 |
T |
|
| Q |
501 |
ttctccagatacttgatgtcacatgcaataa----ttttttggcgcgtacgtttttaaaaagaacatttgtgcttgctttcaggttatttggttggtccg |
596 |
Q |
| |
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|||||| ||||||||||||||| |||||||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
44072386 |
ttctccggatacttgatgtcacgtgcaataaaaagaacatttgcgcttacgtttttaaaaagaacatttgcgcttgctttcaggttatttggttggtctg |
44072485 |
T |
|
| Q |
597 |
tctttgggtcatctgaaaaggacgcaatttgagagtgtccaacaatataatggcgactcttgttcaacttcttgatagtattaagcttcattttttgtgg |
696 |
Q |
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| T |
44072486 |
tctttgggtcatctgaaaaggacgcaattt--gagtgtccaacaacataatggcgactcttgatcaacttcttgatagtattaagcttcattttttgtgg |
44072583 |
T |
|
| Q |
697 |
tggttgaagacgaataagctgaggttttcttttgattttt |
736 |
Q |
| |
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| T |
44072584 |
tggttgaagacgaataagctgaggttttcttttgattttt |
44072623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 661 - 733
Target Start/End: Complemental strand, 40618703 - 40618631
Alignment:
| Q |
661 |
caacttcttgatagtattaagcttcattttttgtggtggttgaagacgaataagctgaggttttcttttgatt |
733 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||||||||||| |
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| T |
40618703 |
caacttcttgatagtattaagcttcattttttgtggtggctgaaggcgagtaagctggatttttcttttgatt |
40618631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 713
Target Start/End: Complemental strand, 23985029 - 23984976
Alignment:
| Q |
660 |
tcaacttcttgatagtattaagcttcattttttgtggtggttgaagacgaataa |
713 |
Q |
| |
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||||||||| ||||||||||| |||||||||| ||||||| | ||||| ||||| |
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| T |
23985029 |
tcaacttctcgatagtattaaacttcatttttggtggtggctaaagacaaataa |
23984976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 532 - 630
Target Start/End: Original strand, 1386473 - 1386571
Alignment:
| Q |
532 |
ttttttggcgcgtacgtttttaaaaagaacatttgtgcttgctttcaggttatttggttggtccgtctttgggtcatctgaaaaggacgcaatttgaga |
630 |
Q |
| |
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|||||||| ||||||| ||| |||||||||||| ||||||||||| ||| ||||||||| | ||||||||||||| ||||||| ||| ||||||||| |
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| T |
1386473 |
ttttttggtgcgtacgctttcaaaaagaacattcacgcttgctttcaagttgtttggttggcctgtctttgggtcatttgaaaagaacgtaatttgaga |
1386571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 532 - 705
Target Start/End: Original strand, 7410854 - 7411025
Alignment:
| Q |
532 |
ttttttggcgcgtacgtttttaaaaagaacatttgtgcttgctttcaggttatttggttggtccgtctttgggtcatctgaaaaggacgcaatttgagag |
631 |
Q |
| |
|
||||||| |||| | | ||| |||||||||||||| ||||||||||| ||||||||||||| |||||||| |||| || |||| || ||| | ||| |
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| T |
7410854 |
ttttttgtcgcgcatgctttcaaaaagaacatttgagcttgctttcaagttatttggttggcatgtctttggatcatttggaaagaacccaactcaagaa |
7410953 |
T |
|
| Q |
632 |
tgtccaacaatataatggcgactcttgttcaacttcttgatagtattaagcttcattttttgtggtggttgaag |
705 |
Q |
| |
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| | ||||||| || | ||||||| |||||||||| ||||||||||||| |||| || ||||||||||||| |
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| T |
7410954 |
tttttaacaataatattg--actcttgatcaacttcttcatagtattaagctccattcttggtggtggttgaag |
7411025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 556 - 657
Target Start/End: Complemental strand, 16125859 - 16125758
Alignment:
| Q |
556 |
aagaacatttgtgcttgctttcaggttatttggttggtccgtctttgggtcatctgaaaaggacgcaatttgagagtgtccaacaatataatggcgactc |
655 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||| | ||||||| ||||| | |||| ||| |||| |||||| | ||| || | ||||||||||| |
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| T |
16125859 |
aagaacatttgtgcttgcttttaggttgtttggttggcctgtctttgtgtcatttcgaaagaacgtaattcgagagttttcaataacacaatggcgactc |
16125760 |
T |
|
| Q |
656 |
tt |
657 |
Q |
| |
|
|| |
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|
| T |
16125759 |
tt |
16125758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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