View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9036_low_12 (Length: 574)

Name: NF9036_low_12
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9036_low_12
NF9036_low_12
[»] chr1 (13 HSPs)
chr1 (16-561)||(47717677-47718222)
chr1 (16-561)||(47745466-47746011)
chr1 (16-549)||(47759801-47760343)
chr1 (16-569)||(47712866-47713428)
chr1 (18-226)||(6521594-6521808)
chr1 (16-189)||(6523594-6523767)
chr1 (21-103)||(6507056-6507138)
chr1 (18-103)||(6512957-6513042)
chr1 (16-95)||(6517364-6517443)
chr1 (16-50)||(47772949-47772983)
chr1 (496-549)||(47704888-47704941)
chr1 (22-70)||(47673751-47673799)
chr1 (143-187)||(47778037-47778081)
[»] scaffold0341 (2 HSPs)
scaffold0341 (21-103)||(1081-1163)
scaffold0341 (21-103)||(8735-8817)
[»] chr5 (3 HSPs)
chr5 (16-182)||(28856511-28856677)
chr5 (16-185)||(28861785-28861954)
chr5 (16-175)||(28831322-28831481)


Alignment Details
Target: chr1 (Bit Score: 534; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 16 - 561
Target Start/End: Complemental strand, 47718222 - 47717677
Alignment:
Q  16 aaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47718222 aaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccg 47718123  T
Q  116 aagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatgttgactgcatgttgcgttactcaaac 215  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47718122 aagttgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatgttgactgcatgttgcgttactcaaac 47718023  T
Q  216 cgatcaatattcggcgttatggaagcttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttcttgggaact 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47718022 cgatcaatattcggcgttatggaagcttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttcttgggaact 47717923  T
Q  316 tgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgctaccgctaatgcaactttgaattttgaaaccacatatggtcttgt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47717922 tgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgctaccgctaatgcaactttgaattttgaaaccacatatggtcttgt 47717823  T
Q  416 gcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttatttacataacaaggttggcggtata 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  47717822 gcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttattttaataacaaggttggcggtata 47717723  T
Q  516 gttctcaaaccaagttgcaatattagacatgaaatctattccttct 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  47717722 gttctcaaaccaagttgcaatattagacatgaaatctattccttct 47717677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 561
Target Start/End: Complemental strand, 47746011 - 47745466
Alignment:
Q  16 aaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||| ||| |||||||    
T  47746011 aaatcaactacggtttctacaatttctcttatggccaaaacactgataaagtaaacgccattggactctgcagaggagatgttaaacccgacctttgccg 47745912  T
Q  116 aagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatgttgactgcatgttgcgttactcaaac 215  Q
     |||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||| | |||||||||||||||||||||||    
T  47745911 cagttgtctcaacgattcaagagttcttctcacaaaactttgtccaacccaaaaagaagcaattagttggtatgataactgcatgttgcgttactcaaac 47745812  T
Q  216 cgatcaatattcggcgttatggaagcttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttcttgggaact 315  Q
    ||||||||||| ||| |||||||  |||||  ||||||||  ||||||| |   | ||||| |||||| |||| ||||||||||||||||||||||||||    
T  47745811 cgatcaatatttggcattatggatacttcattttcatattataagtggaacaatagaaatgtaaccgatgtggctcaatttaatcaagttcttgggaact 47745712  T
Q  316 tgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgctaccgctaatgcaactttgaattttgaaaccacatatggtcttgt 415  Q
    |||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47745711 tgatgaggaaactcaatgaaatagctgcatcaggtgattctcgtcgtaagtttgctaccgctaatgcaactttgaattttgaaaccatatatggtcttgt 47745612  T
Q  416 gcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttatttacataacaaggttggcggtata 515  Q
    ||||||||||||||| || |||   |||||||||||||||||||||||||||||||||||||||| ||| | || |||  |||||||| |||| |||| |    
T  47745611 gcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaaactccaagttttttttataacaagattggtggtaga 47745512  T
Q  516 gttctcaaaccaagttgcaatattagacatgaaatctattccttct 561  Q
    |||||||||| |||||| ||||||||| ||||||| ||||||||||    
T  47745511 gttctcaaactaagttgtaatattagatatgaaatatattccttct 47745466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 16 - 549
Target Start/End: Complemental strand, 47760343 - 47759801
Alignment:
Q  16 aaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccg 115  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| |||||||||||    
T  47760343 aaatcaactacggtttctacaatatttcttatggccaaaacactgacaaagtaaacgccattggactctgtagaggagatgttaaacccgacgtttgccg 47760244  T
Q  116 aagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatgttgactgcatgttgcgttactcaaac 215  Q
     |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||    
T  47760243 cagttgtctcaacgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgataactgcatgttgcgttactcaaac 47760144  T
Q  216 cgatcaatattcggcgttatggaagcttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttcttgggaact 315  Q
    ||||||||||||||||||||||||| ||||||    | ||  | ||||| | |  | |||| ||| ||||||||||||||||| ||||||||||||||||    
T  47760143 cgatcaatattcggcgttatggaaggttcaccaaagttttatatgtggaacatatataatgtaacagaggtggatcaatttaaccaagttcttgggaact 47760044  T
Q  316 tgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgctaccgctaatgcaac---------tttgaattttgaaaccacata 406  Q
    ||||||||||||| ||||| | ||| ||||||||||||||||||||||| |||||||| | |||||||||         |||||||||| |||||| |||    
T  47760043 tgatgaggaaactgaaagagaaagctgcatcaagtgattctcgtcgtaaatttgctacagataatgcaactgatgtaaatttgaattttcaaaccatata 47759944  T
Q  407 tggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttatttacataacaaggtt 506  Q
    ||||||||| ||||| ||||||||||| ||| |||||||||||||| ||||||||||  ||||||| ||||| ||||| | || ||   |||||||| ||    
T  47759943 tggtcttgttcagtgcacacctgatttgtcagagcaagattgcaataattgtttagatggtgctatctcagatattccaagttgttgtaataacaagatt 47759844  T
Q  507 ggcggtatagttctcaaaccaagttgcaatattagacatgaaa 549  Q
    || |||| |||||||||||||||||| ||||| ||| ||||||    
T  47759843 ggtggtagagttctcaaaccaagttgtaatatcagatatgaaa 47759801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 569
Target Start/End: Complemental strand, 47713428 - 47712866
Alignment:
Q  16 aaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||    
T  47713428 aaatcaactacggtttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccg 47713329  T
Q  116 aagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatgttgactgcatgttgcgttactcaaac 215  Q
     |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||| |||||||||||||||||||    
T  47713328 cagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaac 47713229  T
Q  216 cgatcaatattcggcgttatggaagcttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttcttgggaact 315  Q
    | ||||||||| ||| || | |||   |||||    | ||  | || || |  ||| |||| |||||||||||||| |||||||| ||||||||| ||||    
T  47713228 caatcaatatttggcattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtggatccatttaatcgagttcttggaaact 47713129  T
Q  316 tgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgctaccgctaatgcaac---------tttgaattttgaaaccacata 406  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||| |||||||||| | | |||||||||         |||||||||| |||||| |||    
T  47713128 tgatgaggaaactgagagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaattttcaaaccatata 47713029  T
Q  407 tggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttatttacataacaaggtt 506  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||  |||||| ||||||||||| ||||| |   |||||||| ||    
T  47713028 tggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgttataacaagatt 47712929  T
Q  507 ggcggtatagttctcaaaccaagttgcaatattagacatgaaatctattccttctctgctcct 569  Q
    ||  ||| |||| ||||||||||||| ||||||||| ||||| |||||  |||||||| ||||    
T  47712928 ggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgcttctctgatcct 47712866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 6521594 - 6521808
Alignment:
Q  18 atcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccgaa 117  Q
    ||||||||||||||||| |||| |||||||||  | ||||||||||||||||||||  |||| || || ||||||||||| ||||   | | ||| | ||    
T  6521594 atcaactacggtttctataattcctcttatggaaacaacactgacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaa 6521693  T
Q  118 gttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggt------atgttgactgcatgttgcgttactc 211  Q
     ||  |||||  ||||||  |||||||| ||| ||| ||||| ||||| ||||||||| ||||| ||||      |||  || |||||||||||||||||    
T  6521694 attgcctcaaaaattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactc 6521793  T
Q  212 aaaccgatcaatatt 226  Q
    |||||| ||||||||    
T  6521794 aaaccgttcaatatt 6521808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 6523594 - 6523767
Alignment:
Q  16 aaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccg 115  Q
    ||||||||||||||||||||||||||||  | ||  |||||||  |||||||||||||  |||| || |||||||| ||||||||  |  |||  || |     
T  6523594 aaatcaactacggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgttaagacaaacgagtgtct 6523693  T
Q  116 aagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatg 189  Q
     ||||  ||||||| ||||||      ||||||| | ||||||||||||||||||||||| |||||||||||||    
T  6523694 tagttgcctcaatggttcaagtaacaatctcacacagctttgtccaaaccaaaaagaagcaattggttggtatg 6523767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 6507138 - 6507056
Alignment:
Q  21 aactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacc 103  Q
    |||||||||||||| |||| ||||||||||  |||||| ||||||||||||||  |||| || || ||||||||||| |||||    
T  6507138 aactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacc 6507056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 6513042 - 6512957
Alignment:
Q  18 atcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacc 103  Q
    ||||||||||||||||| |||| |||||||||   |||||| ||||||||||||||  |||| || || ||||||||||| |||||    
T  6513042 atcaactacggtttctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacc 6512957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 6517443 - 6517364
Alignment:
Q  16 aaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagat 95  Q
    ||||||||||||||||||| || | ||||||||||  |||||  ||||||||||||||  |||| || ||||||||||||    
T  6517443 aaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagat 6517364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 47772949 - 47772983
Alignment:
Q  16 aaatcaactacggtttctacaatttctcttatggc 50  Q
    |||||||||||||||||||||||||||| ||||||    
T  47772949 aaatcaactacggtttctacaatttctcatatggc 47772983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 47704941 - 47704888
Alignment:
Q  496 ataacaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaa 549  Q
    |||||||| |||| || | |||| ||||||||||||||||||||||| ||||||    
T  47704941 ataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaaa 47704888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 47673751 - 47673799
Alignment:
Q  22 actacggtttctacaatttctcttatggccaaaacactgacaaagtaaa 70  Q
    |||||||||||||||||||||| |||||| || |  |||||||||||||    
T  47673751 actacggtttctacaatttctcgtatggcgaagaacctgacaaagtaaa 47673799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 47778037 - 47778081
Alignment:
Q  143 tctcacaaaactttgtccaaaccaaaaagaagcgattggttggta 187  Q
    ||||||| |||||||||||||| |||| ||||| |||||||||||    
T  47778037 tctcacacaactttgtccaaacaaaaaggaagcaattggttggta 47778081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 1163 - 1081
Alignment:
Q  21 aactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacc 103  Q
    |||||||||||||| |||| ||||||||||  |||||| ||||||||||||||  |||| || || ||||||||||| |||||    
T  1163 aactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacc 1081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 8817 - 8735
Alignment:
Q  21 aactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacc 103  Q
    |||||||||||||| |||| ||||||||||  |||||| ||||||||||||||  |||| || || ||||||||||| |||||    
T  8817 aactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacc 8735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 28856677 - 28856511
Alignment:
Q  16 aaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccg 115  Q
    |||||| ||||||||||||||| ||||| |  ||| || |||   |||||||| ||||| | ||  | ||||||||||||||||| ||  | | ||||||    
T  28856677 aaatcacctacggtttctacaacttctcattcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccg 28856578  T
Q  116 aagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggt 182  Q
     |||| ||| ||  |||||||||||||||| ||| ||  |||||||||| |||||||||| ||||||    
T  28856577 cagttgtcttaacaattcaagagttcttctaacacaaaattgtccaaacaaaaaagaagcaattggt 28856511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 28861954 - 28861785
Alignment:
Q  16 aaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccg 115  Q
    |||||| ||||||||||||||| ||||| |  ||| || |||   |||||||| ||||| | ||  | ||||||||||||||||| ||  | | ||||||    
T  28861954 aaatcacctacggtttctacaacttctcattcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccg 28861855  T
Q  116 aagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttgg 185  Q
     |||| ||| ||  |||||||||||||||| ||| ||   ||||| |||||||||||||| |||||||||    
T  28861854 cagttgtcttaacaattcaagagttcttctaacacaaaaatgtcctaaccaaaaagaagcaattggttgg 28861785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 28831481 - 28831322
Alignment:
Q  16 aaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccg 115  Q
    |||||| ||||||||||||||| ||||| || ||| ||  ||   |||||||| ||||| | ||  | || |||||||||||||| ||  | | ||||||    
T  28831481 aaatcacctacggtttctacaacttctcatacggcaaaggcaacaacaaagtatacgccataggattatgtagaggagatgttaatccaaatgattgccg 28831382  T
Q  116 aagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagc 175  Q
      ||||||| ||  |||||||||||||||| ||| ||  |||||||||||||||||||||    
T  28831381 ccgttatcttaacaattcaagagttcttctaacacaaaattgtccaaaccaaaaagaagc 28831322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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