View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9036_low_14 (Length: 559)
Name: NF9036_low_14
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9036_low_14 |
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| [»] chr7 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 7 - 559
Target Start/End: Original strand, 47072109 - 47072660
Alignment:
| Q |
7 |
gagaagcagagatgaaggtggtagaagtagaattatttgtaactgataccctattatgaatatgaagcattggattcttactttcaataattaatggtac |
106 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47072109 |
gagaagaacagatgaaggtggtagaagtagaattatttgtaactgataccctattatgaatatgaagcaatggattcttactttcaataattaatggtac |
47072208 |
T |
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| Q |
107 |
tgggtacatcaattatatacattttggaagaaaggaagatgaactggaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaataga |
206 |
Q |
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| T |
47072209 |
tgggtacatcaattatatacattttggaagaaaggaagatcaacttgaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaataga |
47072308 |
T |
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| Q |
207 |
aagagcataaactactactatctaactttcataatcaagatgctacatatggcagagattcatgcttcaatttacagttcatttgaatgnnnnnnntgca |
306 |
Q |
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| T |
47072309 |
aagagcataaactactactatctaactttcataatcaagatgctacatatggcagagattcatgcttcaatttacagttcatttgaatgaaaaaac-gca |
47072407 |
T |
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| Q |
307 |
tttgcgacctaaaatttcgtccgcatccaacacaaataaaatgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttgg |
406 |
Q |
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| T |
47072408 |
tttgcgacctaaaatttcgtccgcatccaacacaaataaaatgtaccacttaatatctaaggattgttgatcaagtatctatacagagaagaacggttgg |
47072507 |
T |
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| Q |
407 |
ctgtctctaattgtaatatctatagaatagtggatggatgagagaactgggaaacaagtggtttgatatctctacttctcatgaaagtcaaaaattgatt |
506 |
Q |
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| T |
47072508 |
ctgtctctaattgtaatatctatagaatagtggatggatgagggaactgggaaacaagtggtttgatatctctacttctcatgaaagtcaaaaattgatt |
47072607 |
T |
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| Q |
507 |
aggtagttcctccaaaagagcttgcacaacagagatttgtccacctgtcaaaa |
559 |
Q |
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| T |
47072608 |
aggtagttcctccaaaagagcttgcacaacagagatttgtccacctgtcaaaa |
47072660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 48 - 424
Target Start/End: Original strand, 33598227 - 33598601
Alignment:
| Q |
48 |
actgataccctattatgaatatgaagcattggattcttactttcaataattaatggtactgggtacatcaattatatacattttggaagaaaggaagatg |
147 |
Q |
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| T |
33598227 |
actgataccctattatgaatatgaagcaacgctttcttactttcaataatgaatggtactgggtacatcaattatatacattttggaagaaaggaagatc |
33598326 |
T |
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| Q |
148 |
aactggaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaactactactatctaactttcataatcaagat |
247 |
Q |
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| T |
33598327 |
aacttgaaactgaatcaaataacacaatgtaaactaaaagttaattaacatgaaatagaaagggcataaactactactatctaactttcataatcaagat |
33598426 |
T |
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| Q |
248 |
gctacatatggcagagattcatgcttcaatttacagttcatttgaatgnnnnnnntgcatttgcgacctaaaatttcgtccgcatccaacacaaataaaa |
347 |
Q |
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| T |
33598427 |
gctacatatggcagagattcatgcttcaatctacagttcatttgaatgaaaaacgt--atttgagacctaaaatttcgtccgcatccaacacaaataaaa |
33598524 |
T |
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| Q |
348 |
tgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttggctgtctctaattgtaata |
424 |
Q |
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| T |
33598525 |
tgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttggctgtctctaattgtaata |
33598601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 462 - 548
Target Start/End: Original strand, 47054492 - 47054578
Alignment:
| Q |
462 |
aagtggtttgatatctctacttctcatgaaagtcaaaaattgattaggtagttcctccaaaagagcttgcacaacagagatttgtcc |
548 |
Q |
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| T |
47054492 |
aagtggtttgatatttctacttcgcatgaaagacaaaaactgatcaggtaattcttccaaaagagcttgcacaacagagatctgtcc |
47054578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 344 - 559
Target Start/End: Complemental strand, 18232721 - 18232508
Alignment:
| Q |
344 |
aaaatgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttggctgtctctaattgtaatatctatagaatagtggatgg |
443 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||| || ||| |||||||| |||||| |||||| | || |
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| T |
18232721 |
aaaatgtaccacttaaaatctaaggattgtggatcaactatctatagagagaaaaaaggttgactatct--aattgtaaaatctattgaatagagcgtgc |
18232624 |
T |
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| Q |
444 |
atgagagaactgggaaacaagtggtttgatatctctacttctcatgaaagtcaaaaattgattaggtagttcctccaaaagagcttgcacaacagagatt |
543 |
Q |
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| T |
18232623 |
atgagggaaatgcgaaacgagtggtttgatatctctacttctcatgaaagccagaaattgactaggtagttcctctaaaagagcttgcacaacagagatt |
18232524 |
T |
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| Q |
544 |
tgtccacctgtcaaaa |
559 |
Q |
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| T |
18232523 |
tgtccacctgccaaaa |
18232508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 154 - 295
Target Start/End: Complemental strand, 18232908 - 18232771
Alignment:
| Q |
154 |
aaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaactactactatctaactttcataatcaagatgctaca |
253 |
Q |
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| T |
18232908 |
aaactgaatcaagtaacacaatgtaaactagaagctaacaaacatgaaatagaaatagcataaactactactatctaacatttataatcaaga------a |
18232815 |
T |
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| Q |
254 |
tatggcagagattcatgcttcaattt--acagttcatttgaatg |
295 |
Q |
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| T |
18232814 |
tatagcagagattcatgtttctatttacacagttcatttgaatg |
18232771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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