View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9036_low_17 (Length: 491)

Name: NF9036_low_17
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9036_low_17
NF9036_low_17
[»] chr5 (4 HSPs)
chr5 (1-469)||(30988478-30988946)
chr5 (66-469)||(31002310-31002713)
chr5 (2-469)||(30999082-30999549)
chr5 (66-469)||(30992175-30992578)


Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 30988478 - 30988946
Alignment:
Q  1 aggaatttcttcacttcatatagaagacgttcaaaccgtactttgcaaaaacgatcatcaagttttgcagcttgcattgggatgcatttccaaagtgcca 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30988478 aggaatttcttcatttcatatagaagacgttcaaaccgtactttgcaaaaacgatcatcaagttttgcagcttgcattgggatgcatttccaaggtgcca 30988577  T
Q  101 aaagcgaattatcttcttctcaccacagtccaagagttagaagctgaaaccattgattccctgaaatctatattcccctttccaatctatcctattggcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30988578 aaagcgaattatcttcttctcaccacagtccaagagttagaagctgaaaccattgattccctgaaatctatattcccctttccaatctatcctattggcc 30988677  T
Q  201 cttcaataccttatttagaaatcgaagnnnnnnntccagcaaacaccgatcatagccaggactatataaaatggctagattcacaaccatctgaatctgt 300  Q
    ||||||||||||||||||| |||||||       |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30988678 cttcaataccttatttagatatcgaagaaaaaaatccagccaacaccgatcatagccaggactatataaaatggctagattcacaaccatctgaatctgt 30988777  T
Q  301 actatacatttcatttggtagtttcctttcagtgtctaatgaacaaatggacgaaatcgttgaagcactaaacaatagcggaattcgatacctttacgtg 400  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30988778 actatacatttcattaggtagtttcctttcagtgtctaatgcacaaatggacgaaatcgttgaagcactaaacaatagcggaatacgatacctttacgtg 30988877  T
Q  401 gctcgcggggaaacgtcgcgattaaaagataagtgtggagataaaggcatggtgataccatggtgtgat 469  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30988878 gctcgcggggaaacgtcgcgattaaaagacaagtgtggagataaaggcatggtgataccatggtgtgat 30988946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 66 - 469
Target Start/End: Original strand, 31002310 - 31002713
Alignment:
Q  66 tgcagcttgcattgggatgcatttccaaagtgccaaaagcgaattatcttcttctcaccacagtccaagagttagaagctgaaaccattgattccctgaa 165  Q
    |||||||  |||||| |||||||||||||||  | ||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||| |||| ||    
T  31002310 tgcagctctcattggaatgcatttccaaagttaccaaagcaaattaccttcttctcaccacagtgcaagagttagaagctgaaacaattgatacccttaa 31002409  T
Q  166 atctatattcccctttccaatctatcctattggcccttcaataccttatttagaaatcgaagnnnnnnntccagcaaacaccgatcatagccaggactat 265  Q
    ||||||||||||||||||||||||||||||||| ||| || |||||||||||||  | ||||         |   ||||||||| |||| ||| ||||||    
T  31002410 atctatattcccctttccaatctatcctattggtcctgcagtaccttatttagaccttgaaggaaaaaaaacgaaaaacaccgaccatacccacgactat 31002509  T
Q  266 ataaaatggctagattcacaaccatctgaatctgtactatacatttcatttggtagtttcctttcagtgtctaatgaacaaatggacgaaatcgttgaag 365  Q
    ||||||||||||||||| |||||| ||||||||||| ||||| |||| ||||| |||||||  || | ||||||||  |||| |||||||||| ||||||    
T  31002510 ataaaatggctagattctcaaccaactgaatctgtattatacttttcttttggcagtttccactccgcgtctaatgcccaaacggacgaaatcattgaag 31002609  T
Q  366 cactaaacaatagcggaattcgatacctttacgtggctcgcggggaaacgtcgcgattaaaagataagtgtggagataaaggcatggtgataccatggtg 465  Q
    |||| |||||||| |  |||||||||||||  ||||||||||||||||| ||||| || |||||||||||||||||||| || ||||||||||| |||||    
T  31002610 cactgaacaatagtgatattcgatacctttttgtggctcgcggggaaacatcgcggttgaaagataagtgtggagataagggaatggtgataccttggtg 31002709  T
Q  466 tgat 469  Q
    ||||    
T  31002710 tgat 31002713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 2 - 469
Target Start/End: Original strand, 30999082 - 30999549
Alignment:
Q  2 ggaatttcttcacttcatatagaagacgttcaaaccgtactttgcaaaaacgatcatcaagttttgcagcttgcattgggatgcatttccaaagtgccaa 101  Q
    |||||||| || ||||||||||||||| ||| ||| ||  || ||  | |||||| ||||  | | |||||  |||||| |||||||||||| ||  | |    
T  30999082 ggaatttcgtctcttcatatagaagaccttcgaactgttgttcgcggagacgatcctcaaaatatacagctctcattggaatgcatttccaaggttacca 30999181  T
Q  102 aagcgaattatcttcttctcaccacagtccaagagttagaagctgaaaccattgattccctgaaatctatattcccctttccaatctatcctattggccc 201  Q
    |||| ||||| ||||||||||| ||||| |||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| ||    
T  30999182 aagcaaattaccttcttctcacaacagtgcaagagttagaagctgaaacaattgatacccttaaatctatattcccctttccaatctatcctattggtcc 30999281  T
Q  202 ttcaataccttatttagaaatcgaagnnnnnnntccagcaaacaccgatcatagccaggactatataaaatggctagattcacaaccatctgaatctgta 301  Q
    | || |||||||||||||  | ||||         |   |||||| || |||||||| ||||||||||||||||||||||| |||||||||||||| |||    
T  30999282 tgcagtaccttatttagatcttgaagaaaaaaaaacgaaaaacactgaccatagccacgactatataaaatggctagattctcaaccatctgaatccgta 30999381  T
Q  302 ctatacatttcatttggtagtttcctttcagtgtctaatgaacaaatggacgaaatcgttgaagcactaaacaatagcggaattcgatacctttacgtgg 401  Q
     |||||||||| ||||| ||||||  |||   |||||  |  ||||||||||||||| |||||||||| |||| ||| | ||||||||||||||| ||||    
T  30999382 ttatacatttcttttggcagtttctgttccacgtctagggcccaaatggacgaaatcattgaagcacttaacagtagtgaaattcgatacctttatgtgg 30999481  T
Q  402 ctcgcggggaaacgtcgcgattaaaagataagtgtggagataaaggcatggtgataccatggtgtgat 469  Q
    | | | ||||||| ||| | || ||||| |||||||||||||| || ||||||||||| |||||||||    
T  30999482 cccacagggaaacatcgaggttgaaagacaagtgtggagataagggaatggtgataccttggtgtgat 30999549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 66 - 469
Target Start/End: Original strand, 30992175 - 30992578
Alignment:
Q  66 tgcagcttgcattgggatgcatttccaaagtgccaaaagcgaattatcttcttctcaccacagtccaagagttagaagctgaaaccattgattccctgaa 165  Q
    ||||||||||| ||| |||||||||| | ||    ||||| ||||| ||||||||||| ||||| ||||| |||||||||||||| |||||| |||| ||    
T  30992175 tgcagcttgcactggaatgcatttccgaggttaacaaagcaaattaccttcttctcacaacagtgcaagaattagaagctgaaacaattgatacccttaa 30992274  T
Q  166 atctatattcccctttccaatctatcctattggcccttcaataccttatttagaaatcgaagnnnnnnntccagcaaacaccgatcatagccaggactat 265  Q
    ||||||||||||||||||||||||||||||||| ||| || |||||||||||||| | ||||         |  | ||| |  |||||||||| ||||||    
T  30992275 atctatattcccctttccaatctatcctattggtcctgcagtaccttatttagaacttgaagaaaaaatatcgacgaactctaatcatagccacgactat 30992374  T
Q  266 ataaaatggctagattcacaaccatctgaatctgtactatacatttcatttggtagtttcctttcagtgtctaatgaacaaatggacgaaatcgttgaag 365  Q
    ||||||||||||||||| |||||| ||||||| ||| |||||||||| ||||| ||||||  ||| |  |||| ||  |||| |||||||||| ||||||    
T  30992375 ataaaatggctagattctcaaccagctgaatccgtattatacatttcttttggcagtttcaattccgcatctagtgcccaaacggacgaaatcattgaag 30992474  T
Q  366 cactaaacaatagcggaattcgatacctttacgtggctcgcggggaaacgtcgcgattaaaagataagtgtggagataaaggcatggtgataccatggtg 465  Q
    |||| || ||||| | ||||||||||||||| |||||  |||||||||||||  | || ||||| |||||||||| ||| || ||||||||||| |||||    
T  30992475 cactgaaaaatagtgaaattcgatacctttatgtggcctgcggggaaacgtcaaggttgaaagacaagtgtggaggtaagggaatggtgataccttggtg 30992574  T
Q  466 tgat 469  Q
    ||||    
T  30992575 tgat 30992578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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