View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9036_low_21 (Length: 474)

Name: NF9036_low_21
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9036_low_21
NF9036_low_21
[»] chr2 (2 HSPs)
chr2 (162-334)||(9216470-9216642)
chr2 (350-469)||(38992699-38992818)
[»] chr3 (3 HSPs)
chr3 (350-469)||(45903307-45903426)
chr3 (350-397)||(41570068-41570115)
chr3 (355-397)||(17229749-17229790)
[»] chr6 (3 HSPs)
chr6 (356-469)||(23594610-23594723)
chr6 (353-469)||(26377803-26377919)
chr6 (353-462)||(14277309-14277417)
[»] chr7 (5 HSPs)
chr7 (356-467)||(14792430-14792541)
chr7 (356-469)||(4926192-4926305)
chr7 (356-462)||(19680936-19681042)
chr7 (393-463)||(41985279-41985349)
chr7 (394-469)||(7260343-7260418)
[»] chr1 (7 HSPs)
chr1 (350-469)||(19596059-19596178)
chr1 (356-469)||(46336308-46336421)
chr1 (357-467)||(32495817-32495927)
chr1 (353-460)||(43632841-43632948)
chr1 (353-469)||(43997242-43997358)
chr1 (355-398)||(38953658-38953700)
chr1 (355-398)||(30198297-30198339)
[»] chr5 (3 HSPs)
chr5 (356-467)||(9625524-9625635)
chr5 (356-469)||(39305549-39305662)
chr5 (388-469)||(17539992-17540073)
[»] chr4 (3 HSPs)
chr4 (356-462)||(12240563-12240669)
chr4 (356-469)||(49620580-49620693)
chr4 (353-463)||(23666682-23666792)
[»] chr8 (1 HSPs)
chr8 (353-469)||(13083681-13083798)
[»] scaffold1603 (1 HSPs)
scaffold1603 (389-469)||(911-991)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 162 - 334
Target Start/End: Original strand, 9216470 - 9216642
Alignment:
Q  162 cggtcgtgtggtgatccgaaataggggaggtttgaaagagaaaatatagtatcttatgagagagaaagtttatgagagagaggtggaggtgagatcgtga 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9216470 cggtcgtgtggtgatccgaaataggggaggtttgaaagagaaaatatagtatcttatgagagagaaagtttatgagagagaggtggaggagagatcgtga 9216569  T
Q  262 atgtcactctcatattgttgcaacaagaccaagattccaggaaaactttttctctttcttattatgaatttat 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9216570 atgtcactctcatattgttgcaacaagaccaagattccaggaaaactttttctctttcttattatgaatttat 9216642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 350 - 469
Target Start/End: Original strand, 38992699 - 38992818
Alignment:
Q  350 gggtgaggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtg 449  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38992699 gggtgaggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgtg 38992798  T
Q  450 aaattgttgaaatctgtgct 469  Q
    ||||| ||||||||||||||    
T  38992799 aaattattgaaatctgtgct 38992818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 350 - 469
Target Start/End: Original strand, 45903307 - 45903426
Alignment:
Q  350 gggtgaggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtg 449  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  45903307 gggtgaggatttcctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgta 45903406  T
Q  450 aaattgttgaaatctgtgct 469  Q
    ||||||||||||||||||||    
T  45903407 aaattgttgaaatctgtgct 45903426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 350 - 397
Target Start/End: Complemental strand, 41570115 - 41570068
Alignment:
Q  350 gggtgaggatttgctgctgtaatatttacacgcagttgcacgctgtag 397  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  41570115 gggtgaggatttcctgctgtaatatttacacgcagttgcacgctgtag 41570068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 17229790 - 17229749
Alignment:
Q  355 aggatttgctgctgtaatatttacacgcagttgcacgctgtag 397  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  17229790 aggatttgctgttgta-tatttacacgcagttgcacgctgtag 17229749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 356 - 469
Target Start/End: Complemental strand, 23594723 - 23594610
Alignment:
Q  356 ggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattg 455  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23594723 ggatttcctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattg 23594624  T
Q  456 ttgaaatctgtgct 469  Q
    ||||||| ||||||    
T  23594623 ttgaaatttgtgct 23594610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 353 - 469
Target Start/End: Original strand, 26377803 - 26377919
Alignment:
Q  353 tgaggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaa 452  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  26377803 tgaggatttcctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaatggttaagatctgacattgtgtgaaa 26377902  T
Q  453 ttgttgaaatctgtgct 469  Q
    |||||||||| ||||||    
T  26377903 ttgttgaaatttgtgct 26377919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 353 - 462
Target Start/End: Complemental strand, 14277417 - 14277309
Alignment:
Q  353 tgaggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaa 452  Q
    ||||||||| |||||||| |||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  14277417 tgaggatttcctgctgta-tatttacacttagttgcacgctatagctgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgttaaa 14277319  T
Q  453 ttgttgaaat 462  Q
    ||||||||||    
T  14277318 ttgttgaaat 14277309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 356 - 467
Target Start/End: Complemental strand, 14792541 - 14792430
Alignment:
Q  356 ggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattg 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14792541 ggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgtgaaattg 14792442  T
Q  456 ttgaaatctgtg 467  Q
    ||||||| ||||    
T  14792441 ttgaaatttgtg 14792430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 356 - 469
Target Start/End: Complemental strand, 4926305 - 4926192
Alignment:
Q  356 ggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattg 455  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4926305 ggatttcctgctgtaatatttacacgcagttgtacgctgtagctgttgtacaccgtctgatctgaagtgaacggttaagatctgacattgtgtgaaattg 4926206  T
Q  456 ttgaaatctgtgct 469  Q
    ||||||| ||||||    
T  4926205 ttgaaatttgtgct 4926192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 356 - 462
Target Start/End: Original strand, 19680936 - 19681042
Alignment:
Q  356 ggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattg 455  Q
    |||||| | |||||||||||||| |||||||  ||||||||||||||||||||||||||||||||| |||| ||||||||| ||| ||||||||||||||    
T  19680936 ggatttccagctgtaatatttacccgcagttatacgctgtagctgttctacaccgtctgatctgaaatgaatggttaagatttgatattgtgtgaaattg 19681035  T
Q  456 ttgaaat 462  Q
    || ||||    
T  19681036 ttaaaat 19681042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 393 - 463
Target Start/End: Original strand, 41985279 - 41985349
Alignment:
Q  393 tgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattgttgaaatc 463  Q
    |||||||||||| |||||| ||||||||||||| |||| ||||| ||||||||| ||||||||||||||||    
T  41985279 tgtagctgttctgcaccgtttgatctgaagtgagcggtcaagatctgacattgtatgaaattgttgaaatc 41985349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 469
Target Start/End: Complemental strand, 7260418 - 7260343
Alignment:
Q  394 gtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattgttgaaatctgtgct 469  Q
    ||||||||| || |||||||||||| || |||| ||||||||| ||||||||| |||||||||| |||||| ||||    
T  7260418 gtagctgttttaaaccgtctgatctaaaatgaatggttaagatctgacattgtatgaaattgttaaaatctttgct 7260343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 350 - 469
Target Start/End: Complemental strand, 19596178 - 19596059
Alignment:
Q  350 gggtgaggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtg 449  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||     
T  19596178 gggtgaggatttcctgctgtaatatttacacgcagttacacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatctgatattgtgta 19596079  T
Q  450 aaattgttgaaatctgtgct 469  Q
    ||||||||||||||||||||    
T  19596078 aaattgttgaaatctgtgct 19596059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 356 - 469
Target Start/End: Original strand, 46336308 - 46336421
Alignment:
Q  356 ggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattg 455  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  46336308 ggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgtgaaatta 46336407  T
Q  456 ttgaaatctgtgct 469  Q
    ||||||| ||||||    
T  46336408 ttgaaatttgtgct 46336421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 357 - 467
Target Start/End: Complemental strand, 32495927 - 32495817
Alignment:
Q  357 gatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattgt 456  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  32495927 gattttctactgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgtgaaattat 32495828  T
Q  457 tgaaatctgtg 467  Q
    |||||| ||||    
T  32495827 tgaaatttgtg 32495817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 353 - 460
Target Start/End: Original strand, 43632841 - 43632948
Alignment:
Q  353 tgaggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaa 452  Q
    ||||||||| |||||||||   ||||||||||||||||||||||| |||||| |||| |||||| | || |||||||||||||| |||||||||||||||    
T  43632841 tgaggattttctgctgtaaatattacacgcagttgcacgctgtagttgttctgcaccatctgatttaaaatgaacggttaagatctgacattgtgtgaaa 43632940  T
Q  453 ttgttgaa 460  Q
    ||||||||    
T  43632941 ttgttgaa 43632948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 353 - 469
Target Start/End: Complemental strand, 43997358 - 43997242
Alignment:
Q  353 tgaggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaa 452  Q
    ||||||||| |||||||||   ||||||||||||| | ||||||| |||| | |||||||||||||||| |||||||||| ||| ||| |||||||||||    
T  43997358 tgaggattttctgctgtaaatattacacgcagttgtaggctgtagttgttttgcaccgtctgatctgaaatgaacggttatgatctgatattgtgtgaaa 43997259  T
Q  453 ttgttgaaatctgtgct 469  Q
    |||||||||| ||||||    
T  43997258 ttgttgaaatatgtgct 43997242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 38953700 - 38953658
Alignment:
Q  355 aggatttgctgctgtaatatttacacgcagttgcacgctgtagc 398  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  38953700 aggatttgctgctgtaa-atttacacgcagttgcacgctgtagc 38953658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 30198339 - 30198297
Alignment:
Q  355 aggatttgctgctgtaatatttacacgcagttgcacgctgtagc 398  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||    
T  30198339 aggatttgctggtgtaa-atttacacgcagttgcacgctgtagc 30198297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 356 - 467
Target Start/End: Complemental strand, 9625635 - 9625524
Alignment:
Q  356 ggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattg 455  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  9625635 ggatttactgctgtaatatttacacgcagttgcacgctttagctgttctacaccgtctaatctgaagtgaacggttaagatctgacattgcgtgaaattg 9625536  T
Q  456 ttgaaatctgtg 467  Q
    ||||||||||||    
T  9625535 ttgaaatctgtg 9625524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 356 - 469
Target Start/End: Complemental strand, 39305662 - 39305549
Alignment:
Q  356 ggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattg 455  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  39305662 ggatttcctgctgtaatatttacacgcagttgcacgccgtagctgttctataccgtctgatctgaagtgaacggttaagatttgacattgtatgaaattg 39305563  T
Q  456 ttgaaatctgtgct 469  Q
    ||||||| ||||||    
T  39305562 ttgaaatttgtgct 39305549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 388 - 469
Target Start/End: Original strand, 17539992 - 17540073
Alignment:
Q  388 cacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattgttgaaatctgtgct 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  17539992 cacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatttgacattgtgtgaaattgttgaaatttgtgct 17540073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 356 - 462
Target Start/End: Original strand, 12240563 - 12240669
Alignment:
Q  356 ggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattg 455  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  12240563 ggatttcctgctgtaatatttacacgcagttgcacgttgtagctgttctacaccgtctgatctgaagtgaacgattaagatctgacattgtgtgaaattg 12240662  T
Q  456 ttgaaat 462  Q
    |||||||    
T  12240663 ttgaaat 12240669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 356 - 469
Target Start/End: Original strand, 49620580 - 49620693
Alignment:
Q  356 ggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattg 455  Q
    |||||| ||||||||||||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  49620580 ggatttcctgctgtaatatttacatgcagttgtacgttgtagttgttctacaccgtctgatctgaagtgaaacgttaagatctgacattgtgtgaaattg 49620679  T
Q  456 ttgaaatctgtgct 469  Q
    ||||||| ||||||    
T  49620680 ttgaaatttgtgct 49620693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 463
Target Start/End: Complemental strand, 23666792 - 23666682
Alignment:
Q  353 tgaggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaa 452  Q
    ||||||||| |||||||||   ||||| |||||||  | |||||| |||| | ||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  23666792 tgaggatttcctgctgtaaatattacaggcagttgtccactgtagttgttttgcaccgtctgatttgaagtgaacggtcaagatctgacattgtgtgaaa 23666693  T
Q  453 ttgttgaaatc 463  Q
    |||||||||||    
T  23666692 ttgttgaaatc 23666682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 353 - 469
Target Start/End: Complemental strand, 13083798 - 13083681
Alignment:
Q  353 tgaggatttgctgctgtaatat-ttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaa 451  Q
    ||||||||| ||||||||| || |||||||||||||||| ||||||||||||| ||||| |||||||||| ||||| | | |||| ||||||||||||||    
T  13083798 tgaggattttctgctgtaaaatattacacgcagttgcacactgtagctgttctgcaccgcctgatctgaactgaacagctcagatctgacattgtgtgaa 13083699  T
Q  452 attgttgaaatctgtgct 469  Q
    |||||||||||| |||||    
T  13083698 attgttgaaatccgtgct 13083681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 389 - 469
Target Start/End: Original strand, 911 - 991
Alignment:
Q  389 acgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattgttgaaatctgtgct 469  Q
    |||||||| |||||||  |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||    
T  911 acgctgtaactgttctgtaccgtctgatctgaagtgaacggtcaagatctgacattgtgtaaaattgttgaaatccgtgct 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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