View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9036_low_26 (Length: 386)
Name: NF9036_low_26
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9036_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 38834765 - 38835132
Alignment:
| Q |
1 |
tagagaaattccccatcctatataaaatattaaaaatccaacttttgaaccattcaattcaaatgtatatctccataaggaatagaagaaagatggctag |
100 |
Q |
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| T |
38834765 |
tagagaaattctccatcctatataaaatattaaaaatccaacttttgaaccattcaattcaaatgtatatctccataaggaatagaagaaagatggctag |
38834864 |
T |
|
| Q |
101 |
agtcaaatctgattcattcatgaaaactcaggagttcagataaaagttttacagaatattggtacagccaaaatctagtttcactaaagcataaaatttc |
200 |
Q |
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| T |
38834865 |
agtcaaatctgattcattcatgcaaactcagttgttcagataaaagttttacagaatattggtacagccaaaatctagtttcactaaagcataaaatttc |
38834964 |
T |
|
| Q |
201 |
agttacattgtagtgcaattgcgggaatagtctagttgacttctacaaaatctgataattctgcatcctcatcggaatcattgtcactctcgtatccact |
300 |
Q |
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| T |
38834965 |
agttacattgtagtgcaattgcgggaatagtctagttgacttctacaaaatctgataattctgcatactcatcggaatcattgtcactctcgtatccact |
38835064 |
T |
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| Q |
301 |
cactacatatttgttttgattaggattagccctgtgaggcttagcccttgctggctgcagtgcgatct |
368 |
Q |
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| T |
38835065 |
cactacatatttgttttgattaggattagccccgtgaggcttagcccttgctggctgcggtgcgatct |
38835132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 357
Target Start/End: Original strand, 9869448 - 9869568
Alignment:
| Q |
240 |
cttctacaaaatctgataattctgcatcctcatcg---gaatcattgtcactctcgtatccactcactacatatttgttttgattaggattagccctgtg |
336 |
Q |
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| T |
9869448 |
cttcttcaaaatctgataactctgcatcctcatcatcagactcattgtcactctcggattcactgactacatatttcatttgagtacgattggccctctg |
9869547 |
T |
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| Q |
337 |
aggcttagcccttgctggctg |
357 |
Q |
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| T |
9869548 |
aggtctagcccttgctggctg |
9869568 |
T |
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