View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9036_low_27 (Length: 384)

Name: NF9036_low_27
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9036_low_27
NF9036_low_27
[»] chr1 (1 HSPs)
chr1 (23-375)||(44643681-44644031)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 23 - 375
Target Start/End: Original strand, 44643681 - 44644031
Alignment:
Q  23 gtcccttcgatgacatcggataaaattagaacgatacaaagaaaactttgttagcttattatgggatatatgctcataagagcgaagtagatcttgtagg 122  Q
    |||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44643681 gtcccttcgaggacatcagataaatttagaacgatacaaagaaaactttgttagcttattatgggatatatgctcataagagcgaagtagatcttgtagg 44643780  T
Q  123 gatcaatcttcttacattatttcatttttatcctccatctgttctataataacaatcacattatttgtaaaagaaaattgtcctagaagagtgacacttt 222  Q
    |||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  44643781 gatcgatcttcttacattatttcatttttatcctccatctgtttcataataacaatcac---atttgtaaaagaaaattgtcctagaagagtgacacttt 44643877  T
Q  223 tcagatcttgctaacgaagggaagtgaatattatgtgataaagtgatcatgtgttatttagggttgatgaaaacaaagaataatattaaaggg-nnnnnn 321  Q
    |||||||||||||| |||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||           
T  44643878 tcagatcttgctaatgaagggaagtgaatattatgtgataaaccgatcaagtgttatttagggttgatgaaaacaaagaataatattaaagggaaaaaaa 44643977  T
Q  322 ntgcttactatttgtgaataggcgcagttggtcggtcttttgctctctgcttct 375  Q
     |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44643978 atgcttactatttgtgaataggcgcagttggtcggtcttttgctctcggcttct 44644031  T

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