View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9036_low_28 (Length: 360)
Name: NF9036_low_28
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9036_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 48245035 - 48245362
Alignment:
| Q |
19 |
cttatgttatagaaacatcgctctaaaactttttaacatcatgtgtgacatgtaacaagacagatgtacaactgcatnnnnnnnn--ggaaaatcagttt |
116 |
Q |
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| T |
48245035 |
cttatgctatagaaacatcgctctaaaactttttaacatcatgtgtgacatgtaacaagacagatgtataactgcataaaaaaaaaaggaaaatcagttt |
48245134 |
T |
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| Q |
117 |
atgttacgatctaagtcaatggttgaactacattaaaaaattaagatatgcatnnnnnnnnntataatctgatatacgcagattgacacttgcattggct |
216 |
Q |
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| T |
48245135 |
atgttacgatctcagtcaatgattgaactgcattaaaaaattaagatatgcataaaaaaa--tataatctgatatacgcagattgacacttgcattggct |
48245232 |
T |
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| Q |
217 |
tctatcataatgatgcaaaccaaatcatattttaattggaatcacaaggatccattattgaaatgtatttagacataatccccaatnnnnnnngtatggt |
316 |
Q |
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| T |
48245233 |
tctatcataatgatgcaaaccaaatcatattttaattggaaccacaaggatccattattgaaatgtatttagacataatccccaataaaaaatgtataga |
48245332 |
T |
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| Q |
317 |
aaaaactctcctattgctcttaactccaaa |
346 |
Q |
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| T |
48245333 |
aaaaactctcctattgctcttaactccaaa |
48245362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 217 - 346
Target Start/End: Original strand, 48241291 - 48241421
Alignment:
| Q |
217 |
tctatcataatgatgcaaaccaaatcatattttaattggaatcacaaggatccattattgaaatgtatttagacataatccccaa-tnnnnnnngtatgg |
315 |
Q |
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| T |
48241291 |
tctatcataatgatgcaaaccaaatcatattttgactagaatcacaaggatccattattgaaatgtatttagacataacccccaacaaaaaaaagtattg |
48241390 |
T |
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| Q |
316 |
taaaaactctcctattgctcttaactccaaa |
346 |
Q |
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| T |
48241391 |
aaaaaactctcctattgctctcaactccaaa |
48241421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 48241130 - 48241206
Alignment:
| Q |
19 |
cttatgttatagaaacatcgctctaaaactttttaacatcatgtgtgacatgtaacaagacagatgtacaactgcat |
95 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||||| |||||||| |
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| T |
48241130 |
cttatgttatagaaacttcgctctaaaactttttaacatcctctgtgacatgtaacaagatagatgtataactgcat |
48241206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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