View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9036_low_3 (Length: 692)
Name: NF9036_low_3
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9036_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 648; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 19 - 678
Target Start/End: Original strand, 42687971 - 42688630
Alignment:
| Q |
19 |
ttcctgatatcctgtcattgcagagatggcttgagattgcctgggaaaagggctttgatgccccaggagctgctcaattggatcatgctgtttacggttc |
118 |
Q |
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| T |
42687971 |
ttcctgatatcctgtcattgcagagatggcttgagattgcctgggaaaagggctttgatgccccaggagctgctcaattggatcatgctgtttacggttc |
42688070 |
T |
|
| Q |
119 |
aaaacaatggataggaactactgagtgttctgctctcttgcgttcttttgctcttcgggcaagaatagtggatttcggtcctaaggaatcccaatctgtc |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42688071 |
aaaaaaatggataggaactactgagtgttctgctctcttgcgttcttttgctcttcgggcaagaatagtggatttcggtcctaaggaatcccaatctgtc |
42688170 |
T |
|
| Q |
219 |
gtaggaacaagtgttgataacactgtggacaaaacaagaaatgataagatggcaaacagtaaagttaaaagtgaggcttatcaagttctcatggattttg |
318 |
Q |
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| T |
42688171 |
gtaggaataagtgttgataacactgtggacaaaacaagaaatgataagatggcaaacagtaaagttaaaagtgaggcttatcaagttctcatggattttg |
42688270 |
T |
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| Q |
319 |
tgtggaattacttttctgatgaaaactcaatccaatttggtcagcagcatgttgtgatttgcgagaaaacgtgagggaacattttagatacacatggcta |
418 |
Q |
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| T |
42688271 |
tgtggaattacttttctgatgaaaactcaatccaatttggtcagcagcatgttgtgatttgcgagaaaacgtgagggaacattttagatacacatggcta |
42688370 |
T |
|
| Q |
419 |
accacatcaacaattttgtttcttattgtttaaactttgaaagctttgttggacaggcccttgtactttcaacatgatggtcactcgagaacaatagttg |
518 |
Q |
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| T |
42688371 |
accacatcaacaattttgtttcttattgtttaaactttgaaagctttgttggacaggcccttgtactttcaacatgatggtcactcgagaacaatagttg |
42688470 |
T |
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| Q |
519 |
gagttcaagccaaacatcaacagaatggaattctaccatataatctcctagttttggaccctgctcatgtaaattactcttttcatatttagttgttagt |
618 |
Q |
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| T |
42688471 |
gagttcaagccaaacatcaacagaatggaattctaccatataatctcctagttttggaccctgctcatgtaaattactcttttcatatttagttgttagt |
42688570 |
T |
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| Q |
619 |
atccacgctctcattgtaatctcaattatttttagcaatagcatatcacaccagtctctg |
678 |
Q |
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| T |
42688571 |
atccacgctctcattgtaatctcaattatttttagcaatagcatatcacaccagtgtctg |
42688630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 454 - 590
Target Start/End: Original strand, 29116465 - 29116601
Alignment:
| Q |
454 |
tttgaaagctttgttggacaggcccttgtactttcaacatgatggtcactcgagaacaatagttggagttcaagccaaacatcaacagaatggaattcta |
553 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| | |||| || |||||||| ||||||||||| |
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| T |
29116465 |
tttgaaagctttcttggacagtcccttgtactttcaacatgatggacactcgagaacaatagttggaatccaagtcagacatcaacgaaatggaattctg |
29116564 |
T |
|
| Q |
554 |
ccatataatctcctagttttggaccctgctcatgtaa |
590 |
Q |
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| T |
29116565 |
cattataatctcctagttcttgatcctggtcatgtaa |
29116601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 42 - 208
Target Start/End: Original strand, 29115874 - 29116040
Alignment:
| Q |
42 |
agatggcttgagattgcctgggaaaagggctttgatgccccaggagctgctcaattggatcatgctgtttacggttcaaaacaatggataggaactactg |
141 |
Q |
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||||||||||||||||| ||||||| || ||||||| | || || |||||| |||||||| | || || || ||| ||||||||||| |||||| |
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| T |
29115874 |
agatggcttgagattgcttgggaaagaggttttgatgaatctggctctcatcaattcaatcatgctatctatggctctaaaaaatggataggagctactg |
29115973 |
T |
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| Q |
142 |
agtgttctgctctcttgcgttcttttgctcttcgggcaagaatagtggatttcggtcctaaggaatc |
208 |
Q |
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| T |
29115974 |
aatgtgctgcccttttgcgttcttttggtctccgatcaagggtagtggatttcggtcctaaggaatc |
29116040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 29116295 - 29116355
Alignment:
| Q |
298 |
atcaagttctcatggattttgtgtggaattacttttctgatgaaaactcaatccaatttgg |
358 |
Q |
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|||||||||||||||| |||||||||||||| ||||| || ||||||| || |||||||| |
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| T |
29116295 |
atcaagttctcatggactttgtgtggaattatttttcaaataaaaactcgattcaatttgg |
29116355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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