View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9036_low_32 (Length: 245)
Name: NF9036_low_32
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9036_low_32 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 13888781 - 13889026
Alignment:
| Q |
1 |
atgttgggtaaagttcacgttgcatgagcttatcggaagtagaagttttcccttcttcaaactatacaa-gtaagtagcaatgtccctctagtccctggt |
99 |
Q |
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| T |
13888781 |
atgttgggtaaagttcacgttgcatgagcttatcggaagtagaagttttcccttcttcaaactatacaaagtaagtagcaatgtccctctagtccctggt |
13888880 |
T |
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| Q |
100 |
ctcctttcaatattctcatcttaccgttatcgagtgtgcatttcaatgttaggtacatggttgataaagttggcatatagcattgagagagttggacgac |
199 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13888881 |
ctcctttcaacattctcatcttaccgttatcgagtgtgcatttcaatgttaggtacatggttgataaagttggcatatagcattgagagagttggaagac |
13888980 |
T |
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| Q |
200 |
ctgcgatgatgttatatgatgaaaggggagcgtccaccaagctttg |
245 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13888981 |
ctgcgatgatgttatataatgaaaggggagcgtccaccaagctttg |
13889026 |
T |
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