View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9036_low_33 (Length: 240)
Name: NF9036_low_33
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9036_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 30829080 - 30828869
Alignment:
| Q |
1 |
tggagaaagtaaaattggagactcaagatttcttcaaccttccaatgtcagagaagaaaaagttttggcaaactccccatcatatggagggatttggaca |
100 |
Q |
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| T |
30829080 |
tggagaaagtaaaattggagactcaagatttcttcaaccttccaatgtcagagaagaaaaagttttggcaaactccccatcatatggagggatttggaca |
30828981 |
T |
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| Q |
101 |
agcattggttgttagtgaggagcagaagcttgattgggcagatctcttctatatgataacccttcctaaatactccgaaatgcctcacttatttccgcaa |
200 |
Q |
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| T |
30828980 |
agcatttgttatgagtgaggaacagaaacttgattgggcagatattttctttatgactacccttcctaaacactctagaatgcctcacttgtttccacaa |
30828881 |
T |
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| Q |
201 |
cttcctcttcct |
212 |
Q |
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|||||||||||| |
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| T |
30828880 |
cttcctcttcct |
30828869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 30836017 - 30835794
Alignment:
| Q |
3 |
gagaaagtaaaattggagactcaagatttcttcaaccttccaatgtcagagaagaaaaagttttggcaaactccccatcatatggagggatttggacaag |
102 |
Q |
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| T |
30836017 |
gagaaaataaagttggagatacaagatttcttcaaccttccaatgtcagagaagaaaaagttttggcaaactccccaacatatggagggatttggacaag |
30835918 |
T |
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| Q |
103 |
cattggttgttagtgaggagcagaagcttgattgggcagatctcttctatatgataacccttcctaaatactccgaaatgcctcacttatttccgcaact |
202 |
Q |
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| T |
30835917 |
catttgttatgagtgaggaacagaaacttgattgggcagatatgttttatatgacaacccttcctaaacactctagaatgcctcatttatttccacaact |
30835818 |
T |
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| Q |
203 |
tcctcttcctttaaggtaattttt |
226 |
Q |
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| T |
30835817 |
tcctcatcctttaaggtaactttt |
30835794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 30853971 - 30853760
Alignment:
| Q |
1 |
tggagaaagtaaaattggagactcaagatttcttcaaccttccaatgtcagagaagaaaaagttttggcaaactccccatcatatggagggatttggaca |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |
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| T |
30853971 |
tggagaaagtaaagttggagactcaagatttcttcaaccttccaatgtcagagaagaaaaagttttggcaaactcctcaacatatggagggatttgggca |
30853872 |
T |
|
| Q |
101 |
agcattggttgttagtgaggagcagaagcttgattgggcagatctcttctatatgataacccttcctaaatactccgaaatgcctcacttatttccgcaa |
200 |
Q |
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| T |
30853871 |
agcatttgttgtgagtgatgaacaaaagcttgattgggcagatattttctttatgactacccttcctaaacactctagaatgcctcacttgtttccacaa |
30853772 |
T |
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| Q |
201 |
cttcctcttcct |
212 |
Q |
| |
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|||||||||||| |
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| T |
30853771 |
cttcctcttcct |
30853760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 30841370 - 30841178
Alignment:
| Q |
27 |
gatttcttcaaccttccaatgtcagagaagaaaaagttttggcaaactccccatcatatggagggatttggacaagcattggttgttagtgaggagcaga |
126 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| | ||||| || || | |
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| T |
30841370 |
gattttttcaaccttccaatgtcagagaagaaaaagttttggcaaactcctcaacatatggagggatttggacaagcatttgttttaagtgaagaacaaa |
30841271 |
T |
|
| Q |
127 |
agcttgattgggcagatctcttctatatgataacccttcctaaatactccgaaatgcctcacttatttccgcaacttcctcttcctttaaggt |
219 |
Q |
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| T |
30841270 |
aacttgattgggcagatcttttctttatgacaacccttcctaaacacttgagaatgccacacttatttccacaacttcctcttcctttgaggt |
30841178 |
T |
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