View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9036_low_45 (Length: 204)
Name: NF9036_low_45
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9036_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 40826989 - 40826821
Alignment:
| Q |
16 |
gagatcgatgttgcccgcttcaagaatataaagtaatataattttcatgctatagcatgactatatgtatttagtttctttcacnnnnnnnntatattta |
115 |
Q |
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| T |
40826989 |
gagatcgatgttgcccgcttcaagaatataaagtaatataattttcatgctatagcatgactatatatatttagtttctttcacaaaaaaaa-atattta |
40826891 |
T |
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| Q |
116 |
gttgttcatcctataatattattgtatttaataatattagcaagtcattgtgatttgtttgtgttattga |
185 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40826890 |
gttgttcatcctataatattatagtatttaataatattagcaagtcattgtgatttgtttgtgttattga |
40826821 |
T |
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