View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9036_low_5 (Length: 629)
Name: NF9036_low_5
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9036_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 574; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 14 - 611
Target Start/End: Complemental strand, 19795445 - 19794848
Alignment:
| Q |
14 |
tatggaggtgtgtgtggcattggggttgttggtgtctgaattgaacgaggaaccatggaaagggaaggttattactttcagcagggagcctcagcttcat |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19795445 |
tatggaggtgtgtgtggcattggggttgttggtgtctgaattgaacgaggaaccatggaaagggaaggttattactttcagcagggagcctcagcttcat |
19795346 |
T |
|
| Q |
114 |
gtgattaagggggataatctcaagtccaagacacagtttgtgaggaacatggattgggggatgaacactgattttcagaaggtgtttgatcgcatattgg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19795345 |
gtgattaagggggataatctcaagtccaagacacagtttgtgaggaacatggattgggggatgaacactgattttcagaaggtgtttgatcgcatattgg |
19795246 |
T |
|
| Q |
214 |
atgtagctgttaatgggaatctcaaagaggatcagatgattaagaggatctttgtcttcagtgacatggaatttgatcgagcatctgcaaactcttggga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19795245 |
atgtagctgttaatgggaatctcaaagaggatcagatgattaagaggatctttgtcttcagtgacatggaatttgatcaagcatctgcaaactcttggga |
19795146 |
T |
|
| Q |
314 |
gaccgattatcaagctattactaggaagtatagagaaaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgaaggccacc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19795145 |
gaccgattatcaagctattactaggaagtatagagaaaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgaaggccacc |
19795046 |
T |
|
| Q |
414 |
ccggtgccatccactcagaaaggagtggcactggtaagtgggttttcgaagaatctgctgacattgttcttggataacgaaggtgatataagccctgtag |
513 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
19795045 |
ccggtgccatccactcagaaaggagtggcgctggtaagtgggttttcgaagaatctgctgacattgttcttcgataacgatggtgatataagccctgtag |
19794946 |
T |
|
| Q |
514 |
aagccatggaagctgccattgctggccccgagtatcagaaactagttgtgctggattgattttcttctgtaatttttagtgttttatttagtgcaaca |
611 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
19794945 |
aagccatggaagctgccatcgctggccccgagtatcagaaactagttgtgctggattgattttcttctgtaatttttagtgttttattcagtgcaaca |
19794848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 14 - 614
Target Start/End: Original strand, 19786142 - 19786742
Alignment:
| Q |
14 |
tatggaggtgtgtgtggcattggggttgttggtgtctgaattgaacgaggaaccatggaaagggaaggttattactttcagcagggagcctcagcttcat |
113 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||| || || || ||||||||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
19786142 |
tatggaggtgtctttggcattggggttgttggtgtctgaattgagtgatgagccttggaaagggaaagttattactttcagcgaggagcctcagcttcat |
19786241 |
T |
|
| Q |
114 |
gtgattaagggggataatctcaagtccaagacacagtttgtgaggaacatggattgggggatgaacactgattttcagaaggtgtttgatcgcatattgg |
213 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19786242 |
gtaattaagggggataatctcaagtccaagacacagtttgtgagggatatggattgggggatgaacactgatttccagaaggtgtttgatcgcatattgg |
19786341 |
T |
|
| Q |
214 |
atgtagctgttaatgggaatctcaaagaggatcagatgattaagaggatctttgtcttcagtgacatggaatttgatcgagcatctgcaaactcttggga |
313 |
Q |
| |
|
| || |||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||| |||||| ||| |||| ||| ||||||| |
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|
| T |
19786342 |
aggtggctgttaatgggaatctcaaggaggatcagatgattaaaaggatcttcgttttcagtgacatggagtttgatgaagcgtctgtgaacccttggga |
19786441 |
T |
|
| Q |
314 |
gaccgattatcaagctattactaggaagtatagagaaaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgaaggccacc |
413 |
Q |
| |
|
||||||||| ||||| || |||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
19786442 |
gaccgattaccaagcaatcactaggaagtatagcgagaaagggtatggttctgttgtgcctcagatagttttttggaatctgagagactcgagggccacc |
19786541 |
T |
|
| Q |
414 |
ccggtgccatccactcagaaaggagtggcactggtaagtgggttttcgaagaatctgctgacattgttcttggataacgaaggtgatataagccctgtag |
513 |
Q |
| |
|
|| |||| | |||||||||||||| || ||||| ||||| || || ||||||||||||||| ||||||| ||||| |||||||| |||||||||| || |
|
|
| T |
19786542 |
ccagtgcgtgctactcagaaaggagttgcgctggtgagtggtttctctaagaatctgctgacactgttcttagataatgaaggtgaaataagccctgaag |
19786641 |
T |
|
| Q |
514 |
aagccatggaagctgccattgctggccccgagtatcagaaactagttgtgctggattgattttcttctgtaatttttagtgttttatttagtgcaacaac |
613 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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|
| T |
19786642 |
aagccatggaagctgccattgctggccctgagtatcagaaactagttgtgctggattgattttcttttgtactttttagtgttttatttagtgcaacaac |
19786741 |
T |
|
| Q |
614 |
t |
614 |
Q |
| |
|
| |
|
|
| T |
19786742 |
t |
19786742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 594
Target Start/End: Complemental strand, 15834752 - 15834172
Alignment:
| Q |
14 |
tatggaggtgtgtgtggcattggggttgttggtgtctgaattgaacgaggaaccatggaaagggaaggttattactttcagcagggagcctcagcttcat |
113 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||| |||||| |||||||| |
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| T |
15834752 |
tatggaggtgtctgtggcattggggttgttggtgtctgaattgagcgaggaaccatggaaagggaaggtgattagtttcagtgctgagcctgagcttcat |
15834653 |
T |
|
| Q |
114 |
gtgattaagggggataatctcaagtccaagacacagtttgtgaggaacatggattgggggatgaacactgattttcagaaggtgtttgatcgcatattgg |
213 |
Q |
| |
|
||||||||||||||| |||| ||||||||| || ||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
15834652 |
gtgattaagggggatgatctgaagtccaaggcaaggtttgtgagatacatggattgggggttcaacactgatttccagaaggtgtttgatcgaatattgg |
15834553 |
T |
|
| Q |
214 |
atgtagctgttaatgggaatctcaaagaggatcagatgattaagaggatctttgtcttcagtgacatggaatttgatcgagcatctgcaaactcttggga |
313 |
Q |
| |
|
|||| ||||| ||||||||||| || ||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
15834552 |
atgtggctgtcaatgggaatctgaaggaggatcagatgattaagaggatatttgtatttagtgacatggagtttgatcgagcgtctgcaaaatcttggga |
15834453 |
T |
|
| Q |
314 |
gaccgattatcaagctattactaggaagtatagagaaaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgaaggccacc |
413 |
Q |
| |
|
||||| ||| |||| ||| |||||||| | |||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
15834452 |
gaccggttaccaagttatcactaggaaatttagagagaaagggtatggttctgttttgcctcagatagttttttggaatctgagagattcgatcgccacc |
15834353 |
T |
|
| Q |
414 |
ccggtgccatccactcagaaaggagtggcactggtaagtgggttttcgaagaatctgctgacattgttcttggataacgaaggtgatataagccctgtag |
513 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| | || |
|
|
| T |
15834352 |
ccggtgccatccactcagaaaggagtggcgctgttaagtgggttttcgaagaatctactgacattgttcttggataatgaaggtgatctaagccccgaag |
15834253 |
T |
|
| Q |
514 |
aagccatggaagctgccattgctggccccgagtatcagaaactagttgtgctggattgattttcttctgtaatttttagtg |
594 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
15834252 |
aagccatggaagctaccatcgctggccccgagtatcagaaactagttgtgctggattgatttccttctaaaattattagtg |
15834172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 507
Target Start/End: Complemental strand, 47712344 - 47711851
Alignment:
| Q |
14 |
tatggaggtgtgtgtggcattggggttgttggtgtctgaattgaacgaggaaccatggaaagggaaggttattactttcagcagggagcctcagcttcat |
113 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
47712344 |
tatggatgtgtgtgtggcattgggattgttggtgtctgaattgtgtgaggaaccttggaaagggaaggtgattactttcagtgctgagcctcagcttcat |
47712245 |
T |
|
| Q |
114 |
gtgattaagggggataatctcaagtccaagacacagtttgtgaggaacatggattgggggatgaacactgattttcagaaggtgtttgatcgcatattgg |
213 |
Q |
| |
|
|||||| |||||||| |||| |||||||||||| ||||||||| | | |||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
47712244 |
gtgattcagggggatgatctgaagtccaagacagagtttgtgatggagatggattgggggatgaacactgatttccagaaggtatttgatcgcatattgg |
47712145 |
T |
|
| Q |
214 |
atgtagctgttaatgggaatctcaaagaggatcagatgattaagaggatctttgtcttcagtgacatggaatttgatcgagcatctgcaaactcttggga |
313 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
47712144 |
atgtcgctgtaaatgggaatctcaaggaggatcagatgattaagaggatatttgtattcagtgacatggagtttgatcaagcatctgcaaactcttggga |
47712045 |
T |
|
| Q |
314 |
gaccgattatcaagctattactaggaagtatagagaaaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgaaggccacc |
413 |
Q |
| |
|
|| ||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
47712044 |
aactgattaccaagcaatcactaggaagtatagagagaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgatggcgacc |
47711945 |
T |
|
| Q |
414 |
ccggtgccatccactcagaaaggagtggcactggtaagtgggttttcgaagaatctgctgacattgttcttggataacgaaggtgatataagcc |
507 |
Q |
| |
|
|| ||| || ||||||||||||||||||| ||| ||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
47711944 |
ccagtgtcagccactcagaaaggagtggcgctgttaagtggattttctaagaatctgctgaaattgttcttggataatgaaggtgatataagcc |
47711851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 495 - 575
Target Start/End: Complemental strand, 47711830 - 47711750
Alignment:
| Q |
495 |
ggtgatataagccctgtagaagccatggaagctgccattgctggccccgagtatcagaaactagttgtgctggattgattt |
575 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47711830 |
ggtgatataagccctgtaggagttatggaagctgcaattgctggccccgagtatcagaaactagttgtgctggattgattt |
47711750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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