View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9036_low_9 (Length: 603)
Name: NF9036_low_9
Description: NF9036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9036_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 152 - 588
Target Start/End: Original strand, 44856578 - 44857014
Alignment:
| Q |
152 |
ctactaaaatcttcactaaaatgtcttgtccctttgctcaaaacttcatcccaagtcaacccatgtatcatgttgaatgaagcaaaacttgattcacacc |
251 |
Q |
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| T |
44856578 |
ctactaaaatcttcactaaaatgtcttgtccctttgctcaaaacttcatcccaagtcaacccatgtatcatgttgaatgaagcaaaacttgattcacacc |
44856677 |
T |
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| Q |
252 |
tttccatagggttcaatatcctattacaagcattcttttgaaaccctattgactcaaaatcctcaaaaaatgtcttgttcaaaagtgcttccaagtaaaa |
351 |
Q |
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| T |
44856678 |
tttccatagggttcaatatcctattacaagcattcttttgaaaccctattgactcaaaatcctcaaaaaatgtcttgttcaaaagtgcttccaagtaaaa |
44856777 |
T |
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| Q |
352 |
aagcaaacttcttggattctttgaaaaagatatttttatatcataaggttgtaaaagtaaagaaactttttcatacactttgcttcctgtgtgtctaagt |
451 |
Q |
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| T |
44856778 |
aagcaaacttcttggattctttgaaaaagatatttttatatcataaggttgtaaaagtaaagaaactttttcatacactttgcttcctgtgtgtctaagt |
44856877 |
T |
|
| Q |
452 |
tgcattgttaatgaacgacttagaagtctcactgaagatcttgcttcagaaacagccaccaagaaatgttgtacaacgttgtcattgtcttgaacatgat |
551 |
Q |
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| T |
44856878 |
tgcattgttaatgaacgacttagaagtctcactgaagatcttgcttcagaaacagccaccaagaaatgttgtacaacgttgtcattgtcttgaacatgat |
44856977 |
T |
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| Q |
552 |
gatgaaaattcttctgagcaacgacattagaagaacc |
588 |
Q |
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| T |
44856978 |
gatgaaaattcttctgagcaacgacattagaagaacc |
44857014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 44856450 - 44856303
Alignment:
| Q |
1 |
tcagttcatccaagtttacaaatatttagagttgataaaggagtcaactttgattctgtttacatggaagatatgggtggggacaagtcttcaaggttgg |
100 |
Q |
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| T |
44856450 |
tcagttcatccaagtttacaaatatttagagttgataaaggagtcaactttgattctgtttacatggaagatatgggtggggacaagtcttcaaggttgg |
44856351 |
T |
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| Q |
101 |
taccaaacatggttaggattatggttgcacctggtttttatgtctatg |
148 |
Q |
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| T |
44856350 |
taccaaacatggttaggattatggttgcacctggtttttatgtctatg |
44856303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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