View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9037_high_2 (Length: 415)

Name: NF9037_high_2
Description: NF9037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9037_high_2
NF9037_high_2
[»] chr5 (3 HSPs)
chr5 (1-400)||(5894476-5894880)
chr5 (1-58)||(31084335-31084392)
chr5 (1-52)||(13287395-13287446)
[»] chr8 (9 HSPs)
chr8 (1-54)||(29447104-29447157)
chr8 (1-48)||(4298886-4298933)
chr8 (1-54)||(22651988-22652041)
chr8 (1-54)||(28745510-28745563)
chr8 (1-52)||(2572052-2572103)
chr8 (1-47)||(8342984-8343030)
chr8 (1-47)||(18170483-18170529)
chr8 (1-47)||(18634051-18634097)
chr8 (1-47)||(20873081-20873127)
[»] chr7 (9 HSPs)
chr7 (1-54)||(7438718-7438771)
chr7 (1-58)||(9778512-9778569)
chr7 (1-52)||(6028637-6028688)
chr7 (1-48)||(11061076-11061123)
chr7 (7-58)||(32094010-32094061)
chr7 (1-47)||(9408335-9408381)
chr7 (1-58)||(5409826-5409883)
chr7 (1-54)||(11665434-11665487)
chr7 (1-54)||(24339654-24339707)
[»] chr6 (5 HSPs)
chr6 (1-47)||(403865-403911)
chr6 (1-47)||(426515-426561)
chr6 (1-54)||(5970102-5970155)
chr6 (1-58)||(10770664-10770721)
chr6 (1-54)||(16766709-16766762)
[»] chr4 (4 HSPs)
chr4 (1-58)||(12895106-12895163)
chr4 (1-54)||(24613695-24613748)
chr4 (1-46)||(6485613-6485658)
chr4 (1-58)||(21720497-21720554)
[»] chr3 (5 HSPs)
chr3 (1-52)||(39756248-39756299)
chr3 (1-56)||(49651778-49651833)
chr3 (1-47)||(1509551-1509597)
chr3 (1-47)||(55401087-55401133)
chr3 (1-33)||(35222500-35222532)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-47)||(46694-46740)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-47)||(17750-17796)
[»] chr2 (1 HSPs)
chr2 (1-47)||(30335429-30335475)
[»] chr1 (5 HSPs)
chr1 (1-47)||(22515888-22515934)
chr1 (1-47)||(22881617-22881663)
chr1 (1-47)||(38078662-38078708)
chr1 (1-58)||(1486699-1486756)
chr1 (1-46)||(32461465-32461510)


Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 5894880 - 5894476
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacaccggggcacatataatccaagaagtgttagtgctttatattat 100  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||| ||| ||||||| ||| ||||| |||||||||||||||    
T  5894880 aatttgaaaaaatcatataatttaatctaactacaagtgtcggtgtcgtgtcggacaccgggacacgtataatctaaggagtgtcagtgctttatattat 5894781  T
Q  101 tgaatcaaatca-----tacatatgatgagttgtgatttgttagcaggactatgtgtcgtctaagcctaataggagcgagagcacctagatcttgctgga 195  Q
    ||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5894780 tgaatcaaatcaaatcatacatatgatgagttgtgatttgttagcaggactatgtgtcgtctaagcctaataggagcgagagcacctagatcttgctgga 5894681  T
Q  196 taaaacggactctcttgaatcatgcttgtttgtatgtttgttcatttggtgtttgtaagagacggtcactgtgtttggtgggactacagtttttgttgta 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5894680 taaaacggactctcttgaatcatgcttgtttgtatgtttgttcatttggtgtttgtaagagacggtcactgtgtttggtgggactacagtttttgttgta 5894581  T
Q  296 gcgacggaacttgttgtccggttgcttatctctgtataaattatgtttatatgttatgttgaatctttaaaggagtttcatagtgctacaatttttcgtg 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5894580 gcgacggaacttgttgtccggttgcttatctctgtataaattatgtttatatgttatgttgaatctttaaaggagtttcatagtgctacaatttttcgtg 5894481  T
Q  396 atgtc 400  Q
    |||||    
T  5894480 atgtc 5894476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31084335 - 31084392
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 58  Q
    |||||||||||||||||||||| ||| ||| ||||| ||||| |||| ||||||||||    
T  31084335 aatttgaaaaaatcacataattcaatgtaattacaagtgtcgatgtcgtgtcggacac 31084392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13287446 - 13287395
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtc 52  Q
    |||||||||||||||||||||| | | ||||||||| |||||||||| ||||    
T  13287446 aatttgaaaaaatcacataattcagtgtaactacaagtgtcggtgtcgtgtc 13287395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 29447157 - 29447104
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 54  Q
    ||||||| |||||||||||||| ||| ||||||||| |||||||||||||||||    
T  29447157 aatttgagaaaatcacataattcaatgtaactacaagtgtcggtgtcatgtcgg 29447104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4298933 - 4298886
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtca 48  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  4298933 aatttgaaaaaatcacataatttaatgtaattacaagtgtcggtgtca 4298886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22651988 - 22652041
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 54  Q
    |||||||||||||||||||||| ||| ||| ||||| |||||||||| ||||||    
T  22651988 aatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcgg 22652041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 28745510 - 28745563
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 54  Q
    ||||||||||| |||||||||| ||| ||||||||||||||| |||| ||||||    
T  28745510 aatttgaaaaattcacataattcaatgtaactacaaatgtcgatgtcgtgtcgg 28745563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2572103 - 2572052
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtc 52  Q
    |||||||||||||||||||||||| | ||| ||||| |||||||||| ||||    
T  2572103 aatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcgtgtc 2572052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8342984 - 8343030
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 47  Q
    |||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  8342984 aatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 8343030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18170529 - 18170483
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 47  Q
    ||||||||||||| |||||||| ||| ||| ||||||||||||||||    
T  18170529 aatttgaaaaaattacataattcaatgtaattacaaatgtcggtgtc 18170483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18634097 - 18634051
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 47  Q
    ||||||||||||| |||||||| ||| ||| ||||||||||||||||    
T  18634097 aatttgaaaaaattacataattcaatgtaattacaaatgtcggtgtc 18634051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20873081 - 20873127
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 47  Q
    |||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  20873081 aatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 20873127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7438718 - 7438771
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 54  Q
    |||||||||||||||||||||| ||| ||| ||||| |||||||||||||||||    
T  7438718 aatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcatgtcgg 7438771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 9778512 - 9778569
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 58  Q
    |||||||||||||||||||||| | | ||| ||||| |||||||||| ||||||||||    
T  9778512 aatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcgtgtcggacac 9778569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6028637 - 6028688
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtc 52  Q
    |||||||||| || |||||||||||| ||| |||||||||||||||| ||||    
T  6028637 aatttgaaaatataacataatttaatgtaattacaaatgtcggtgtcgtgtc 6028688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11061123 - 11061076
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtca 48  Q
    |||||||||||||||||||||||| | ||| ||||| |||||||||||    
T  11061123 aatttgaaaaaatcacataatttagtataattacaagtgtcggtgtca 11061076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 32094061 - 32094010
Alignment:
Q  7 aaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 58  Q
    |||||||||||||||| | | ||| |||||||||||||||| ||||||||||    
T  32094061 aaaaaatcacataattcagtgtaattacaaatgtcggtgtcgtgtcggacac 32094010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9408381 - 9408335
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 47  Q
    |||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  9408381 aatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 9408335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5409883 - 5409826
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 58  Q
    |||||||||||||||||||||| | |  || ||||| |||||||||| ||||||||||    
T  5409883 aatttgaaaaaatcacataattcagtgcaattacaagtgtcggtgtcgtgtcggacac 5409826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 11665487 - 11665434
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 54  Q
    |||||||||||||||||||||| | ||||| || || ||||| |||||||||||    
T  11665487 aatttgaaaaaatcacataattcagtctaattataagtgtcgatgtcatgtcgg 11665434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24339654 - 24339707
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 54  Q
    |||||||||||||||||||||| | | ||| ||||| |||||||||| ||||||    
T  24339654 aatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcgg 24339707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 403911 - 403865
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 47  Q
    |||||||||||||||||||||||| | ||||||||| ||||||||||    
T  403911 aatttgaaaaaatcacataatttagtgtaactacaagtgtcggtgtc 403865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 426561 - 426515
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 47  Q
    |||||||||||||||||||||| ||| ||| ||||| ||||||||||    
T  426561 aatttgaaaaaatcacataattaaatgtaattacaagtgtcggtgtc 426515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5970155 - 5970102
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 54  Q
    |||||||||||||||||||||| | | ||| ||||||||| |||||| ||||||    
T  5970155 aatttgaaaaaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcgg 5970102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10770721 - 10770664
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 58  Q
    |||||||||||||||||||||| | | ||| ||||| |||||||||| |||| |||||    
T  10770721 aatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcagacac 10770664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 16766709 - 16766762
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 54  Q
    |||||||||||||||||||||| | | ||| ||||| |||||||||| ||||||    
T  16766709 aatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcgg 16766762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 12895163 - 12895106
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 58  Q
    |||||||||||||||||||||| ||  ||| ||||| |||||||||| ||||||||||    
T  12895163 aatttgaaaaaatcacataattcaaagtaattacaagtgtcggtgtcgtgtcggacac 12895106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24613748 - 24613695
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 54  Q
    ||||||| |||||||||||||| ||| ||| ||||| |||||||||||||||||    
T  24613748 aatttgagaaaatcacataattcaatgtaagtacaagtgtcggtgtcatgtcgg 24613695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6485658 - 6485613
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgt 46  Q
    |||||||||||||||||||||||| | ||| ||||| |||||||||    
T  6485658 aatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgt 6485613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 21720554 - 21720497
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 58  Q
    ||||||| ||||||| |||||||||| |||||| | ||||||||||| ||| ||||||    
T  21720554 aatttgataaaatcatataatttaatgtaactatatatgtcggtgtcttgttggacac 21720497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39756248 - 39756299
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtc 52  Q
    ||||| |||||||||||||||||||| ||| ||||| |||||||||| ||||    
T  39756248 aatttaaaaaaatcacataatttaatataattacaagtgtcggtgtcgtgtc 39756299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 49651833 - 49651778
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggac 56  Q
    |||||||||||||||||||||| | | ||| ||||| |||||||||| ||||||||    
T  49651833 aatttgaaaaaatcacataattcactgtaattacaagtgtcggtgtcgtgtcggac 49651778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1509551 - 1509597
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 47  Q
    |||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  1509551 aatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 1509597  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 55401087 - 55401133
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 47  Q
    |||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  55401087 aatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 55401133  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35222500 - 35222532
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaacta 33  Q
    |||||||||||||||||||||| ||||||||||    
T  35222500 aatttgaaaaaatcacataattcaatctaacta 35222532  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 46694 - 46740
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 47  Q
    |||||||||||||||||||||| | | ||| ||||||||||||||||    
T  46694 aatttgaaaaaatcacataattcagtgtaattacaaatgtcggtgtc 46740  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17796 - 17750
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 47  Q
    |||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  17796 aatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 17750  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30335429 - 30335475
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 47  Q
    ||||||||||||| |||||||||| | ||| ||||||||||||||||    
T  30335429 aatttgaaaaaatgacataatttagtgtaattacaaatgtcggtgtc 30335475  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22515934 - 22515888
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 47  Q
    |||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  22515934 aatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 22515888  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22881663 - 22881617
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 47  Q
    |||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  22881663 aatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 22881617  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38078708 - 38078662
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 47  Q
    |||||||||||||||||||||| ||| ||| ||||| ||||||||||    
T  38078708 aatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtc 38078662  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1486756 - 1486699
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 58  Q
    |||||||||||||||||||||| | | ||| || || |||||||||| ||||||||||    
T  1486756 aatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcggacac 1486699  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32461510 - 32461465
Alignment:
Q  1 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgt 46  Q
    |||||||||||||||||||||||||| ||| ||||| ||| |||||    
T  32461510 aatttgaaaaaatcacataatttaatgtaattacaagtgttggtgt 32461465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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