View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9037_low_1 (Length: 421)

Name: NF9037_low_1
Description: NF9037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9037_low_1
NF9037_low_1
[»] chr3 (10 HSPs)
chr3 (17-411)||(53058917-53059313)
chr3 (99-396)||(53062113-53062420)
chr3 (17-395)||(53340817-53341201)
chr3 (92-388)||(53067876-53068169)
chr3 (202-395)||(37418210-37418400)
chr3 (222-316)||(53972116-53972210)
chr3 (17-81)||(53068475-53068539)
chr3 (91-152)||(37418438-37418499)
chr3 (233-302)||(23224663-23224732)
chr3 (234-298)||(49857857-49857921)
[»] chr7 (10 HSPs)
chr7 (17-388)||(31013642-31014019)
chr7 (213-309)||(11377380-11377476)
chr7 (210-265)||(11374242-11374297)
chr7 (203-316)||(12646303-12646416)
chr7 (207-309)||(12539862-12539964)
chr7 (222-310)||(47606602-47606690)
chr7 (222-312)||(20001155-20001245)
chr7 (209-309)||(12483384-12483484)
chr7 (209-309)||(12504814-12504914)
chr7 (207-262)||(12623777-12623833)
[»] chr2 (2 HSPs)
chr2 (100-337)||(6687163-6687406)
chr2 (274-330)||(44253247-44253303)
[»] chr8 (2 HSPs)
chr8 (210-309)||(35396089-35396188)
chr8 (237-312)||(5387801-5387876)
[»] chr4 (1 HSPs)
chr4 (225-298)||(56164454-56164527)
[»] chr1 (1 HSPs)
chr1 (193-265)||(15330472-15330544)


Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 53059313 - 53058917
Alignment:
Q  17 aagttcaagggtttcagttcgtctttgtattcctgcaatgataagttgggttatttcgttgggttggtatgcagcacaacatttgaagcggaatgatcgt 116  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53059313 aagttcaagggtttcagttcgtctttgtattgctgcaatgataagtttggttatttcgttgggttggtatgcagcacaacatttgaagcggaatgatcgt 53059214  T
Q  117 attggcagtgtgttgtcacgcgatagcatgattgagtaaacatgactgcaaagagtggtttcgttcatgaaggctgtttggtcgatgaaatcga--gagt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  53059213 attggcagtgtgttgtcacgcgatagcatgattgagtaaacatgactgcaaagagtggtttcgttcatgaaggctgtttggtcgatgaaatcgttcgagt 53059114  T
Q  215 gaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattgag 314  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53059113 gaggactgagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattgag 53059014  T
Q  315 tccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacatggcagttaataatattattgcct 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53059013 tccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacatggcagttaataatattattgcct 53058917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 99 - 396
Target Start/End: Complemental strand, 53062420 - 53062113
Alignment:
Q  99 ttgaagcggaatgatcgtattggcagtgtgttgtcacgcga----tagcatgattgagtaaacatgactgcaaagagtggtttcgttcatgaaggctgtt 194  Q
    |||| |||||||||||||||||||||||| ||||| |||||    |||||||| |||||||||||||||||||||||  |||   ||| |||||  ||      
T  53062420 ttgaggcggaatgatcgtattggcagtgtattgtcgcgcgagcgatagcatgactgagtaaacatgactgcaaagagatgttgtcttcgtgaagtttggg 53062321  T
Q  195 tggtcgatgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggaga 294  Q
    |||||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53062320 tggtcggtgaaatcgagagtgaagacatagagccataatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggaga 53062221  T
Q  295 gaatgtgacagat-----aattgagtccggaagggag-ctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 388  Q
    |||||||||||||     | ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53062220 gaatgtgacagatagttgagttgagtctggaagggagactaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 53062121  T
Q  389 ggcagtta 396  Q
    ||||||||    
T  53062120 ggcagtta 53062113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 17 - 395
Target Start/End: Original strand, 53340817 - 53341201
Alignment:
Q  17 aagttcaagggtttcagttcgtctttgtattcctgcaatgataagttgggttatttcgttgggttggt---atgcagcacaacatttgaagcggaatgat 113  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||||||||| |  | |||||||| ||   ||  |  ||||||||||| ||||||||||    
T  53340817 aagttcaagggtttcagttcgtctttgtatggctgcaataataagttgggtgaaattgttgggttcgtccaatctaaaacaacatttgaggcggaatgat 53340916  T
Q  114 cgtattggcagtgtgttgtcacgcgatagcatgattgagtaaacatgactgcaaagagtggtttcgttcatgaaggctgtttggtcgatgaaatcgagag 213  Q
     ||||||||||||||||||| | |||||||| || |||||||| ||||||||||| |||||||   | | |||||  ||| || ||| | ||||||||||    
T  53340917 agtattggcagtgtgttgtcgcacgatagcaagactgagtaaatatgactgcaaatagtggttatttccgtgaagattgtgtgatcggtaaaatcgagag 53341016  T
Q  214 tgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattga 313  Q
    ||||||| ||||  || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53341017 tgaggactgagatacataatggtttccacctctttgagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattga 53341116  T
Q  314 gtccggaagggagctaaccctg------tcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacatggcagtt 395  Q
    ||| ||||||||||||||||||      ||||||||||| ||||| |||   ||||||||||||||||| ||||| ||||| ||||||    
T  53341117 gtctggaagggagctaaccctgtcgtactcacactcttctattggtatc---gatgatcgctgcttcttggactttgacatcgcagtt 53341201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 92 - 388
Target Start/End: Complemental strand, 53068169 - 53067876
Alignment:
Q  92 acaacatttgaagcggaatgatcgtattggcagtgtgttgtcacgcgatagcatgattgagtaaacatgactgcaaagagtggtttcgttcatgaaggct 191  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||||||||||| |||||||||   |||||||| |||||||   ||| |||||  |    
T  53068169 acaacatttgaagcggaatgatcgtattggatgtgtgttgtcgcgcgatagcatgactgagtaaaccatactgcaaatagtggttgttttcgtgaagatt 53068070  T
Q  192 gtttggtcgatgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaagg 291  Q
     | || ||| |||||| |||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53068069 atgtgatcggtgaaattgagagtgaagactgagagccataatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaagg 53067970  T
Q  292 agagaatgtgacagataattgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 388  Q
    ||||||||||| ||||||| ||||||||||||||||||||| |||  | |||||| |||||||||||   ||||||| |||||||||||||||||||    
T  53067969 agagaatgtgatagataatcgagtccggaagggagctaaccttgttgcgctcttctattggaatcga---tgatcgccgcttcttcgacttggacat 53067876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 37418400 - 37418210
Alignment:
Q  202 tgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtg 301  Q
    |||||||||| |||| ||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  37418400 tgaaatcgagggtgaagactgagagccacaatgggttccacctctttgagaggatgcttgtggcgacagtgtctttggttgggagaaaggagagaatatg 37418301  T
Q  302 acagataattgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacatggcagtt 395  Q
    ||||||||||||||| |||||||||||||||||||| |||| |||  ||||||||    ||||||| |||||||||||||||||||| ||||||    
T  37418300 acagataattgagtctggaagggagctaaccctgtcgcacttttctgttggaatc---catgatcgttgcttcttcgacttggacatcgcagtt 37418210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 316
Target Start/End: Original strand, 53972116 - 53972210
Alignment:
Q  222 gagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattgagtc 316  Q
    |||| ||| ||||| ||||||||||| ||||||||| |||||| | ||| |||||||||||| ||||| ||||| |||| | |||||||||||||    
T  53972116 gagatccataatggcttccacctctttgagaggatggttgtgggggcggagtctttggttggaagaaaagagagtatgtaagagataattgagtc 53972210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 53068539 - 53068475
Alignment:
Q  17 aagttcaagggtttcagttcgtctttgtattcctgcaatgataagttgggttatttcgttgggtt 81  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| ||| || | ||||||||    
T  53068539 aagttcaagggtttcagttcgtctttgtatcgctgcaatgataagtttggtgatattgttgggtt 53068475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 37418499 - 37418438
Alignment:
Q  91 cacaacatttgaagcggaatgatcgtattggcagtgtgttgtcacgcgatagcatgattgag 152  Q
    |||||||||||| |||||||||||  |||||||| ||||||||||| |||||||||| ||||    
T  37418499 cacaacatttgaggcggaatgatctgattggcagggtgttgtcacgtgatagcatgactgag 37418438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 23224663 - 23224732
Alignment:
Q  233 tggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtga 302  Q
    ||||||||| ||||  ||||| ||||||||| || | ||||||||||| || ||| ||||||||||||||    
T  23224663 tggtttccatctctctgagagaatgcttgtgacggctgtgtctttggtgggaagacaggagagaatgtga 23224732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 49857857 - 49857921
Alignment:
Q  234 ggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaat 298  Q
    |||||||||||||||||||||| | ||||||||  || |||||| |  || ||||||||||||||    
T  49857857 ggtttccacctcttggagaggacggttgtggcggtggcgtctttcgacggaagaaaggagagaat 49857921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 17 - 388
Target Start/End: Complemental strand, 31014019 - 31013642
Alignment:
Q  17 aagttcaagggtttcagttcgtctttgtattcctgcaatgataagttgggttatttcgttgggttggtatgcagcacaacatttgaagcggaatgatcgt 116  Q
    |||||||||||||||||||| |||||||||| |||| || ||||||||||||||  | ||||||| | ||||||||||| ||||||||||||||||| ||    
T  31014019 aagttcaagggtttcagttcatctttgtattgctgcgataataagttgggttataaccttgggtttgcatgcagcacaagatttgaagcggaatgattgt 31013920  T
Q  117 attggcagtgtgttgtcacgcgatagcatgattgagtaaacatgactgcaaaga------gtggtttcgttcatgaaggctgtttggtcgatgaaatcga 210  Q
    |||||||| ||||| |  |  |||||||||| |||||||||||||| |||||||      ||||||   || |||||| |  | || | | |||||||||    
T  31013919 attggcagggtgttattgcatgatagcatgactgagtaaacatgacagcaaagacaaagagtggttgttttgatgaagacattgtgattggtgaaatcga 31013820  T
Q  211 gagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataat 310  Q
    |||||| ||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31013819 gagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaatgtgacagataat 31013720  T
Q  311 tgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 388  Q
    ||||||||||||||||||| ||||||| |||||||| |||||||||||||||    | | ||||||||||||||||||    
T  31013719 tgagtccggaagggagctatccctgtcgcactcttctattggaatcgatgatcgctgattcttcttcgacttggacat 31013642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 309
Target Start/End: Complemental strand, 11377476 - 11377380
Alignment:
Q  213 gtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataa 309  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||| |||||| | |  |||||||| || ||||| ||||| ||||| |||||||    
T  11377476 gtgaggacggagagccacaatgggttccatctcttggagaggatgctagtggcggcagattctttggtaggaagaaaagagaggatgtggcagataa 11377380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 11374297 - 11374242
Alignment:
Q  210 agagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggc 265  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||    
T  11374297 agagtgaggacggagagccacaatgggttccatctcttggagaggatgctagtggc 11374242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 12646416 - 12646303
Alignment:
Q  203 gaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtga 302  Q
    ||||| |||||||||||  ||  ||||||| |||||||| || |||||||||||| |||| ||| |||  | || ||| |||||||| |||||||||||     
T  12646416 gaaatggagagtgaggagtgaatgccacaaaggtttccatcttttggagaggatggttgttgcggcggattgttgggtagggagaaatgagagaatgtgg 12646317  T
Q  303 cagataattgagtc 316  Q
    |||||||| |||||    
T  12646316 cagataatggagtc 12646303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 12539964 - 12539862
Alignment:
Q  207 tcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacaga 306  Q
    ||||||||||  || ||| |||||||||| ||||| || |||||||| |||||||||||  | |  | |||||| |||||||| ||||||||||| ||||    
T  12539964 tcgagagtgaaaactgagtgccacaatggattccatcttttggagagaatgcttgtggcagcagattgtttggtagggagaaaagagagaatgtggcaga 12539865  T
Q  307 taa 309  Q
    |||    
T  12539864 taa 12539862  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 47606602 - 47606690
Alignment:
Q  222 gagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataat 310  Q
    |||||||| | ||| ||||| ||||| |||||||||||||| ||  || ||  ||||||||||||||| || ||||||||||| |||||    
T  47606602 gagagccatagtgggttccatctctttgagaggatgcttgtagctgcgctgagtttggttgggagaaaagatagaatgtgacatataat 47606690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 312
Target Start/End: Original strand, 20001155 - 20001245
Alignment:
Q  222 gagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattg 312  Q
    |||||||| | ||||||||| ||||| |||||||||||||||||  | | || ||| || |||||||| || || |||||||| |||||||    
T  20001155 gagagccatattggtttccatctcttagagaggatgcttgtggcagcagagttttttgtcgggagaaaagaaaggatgtgacaaataattg 20001245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 309
Target Start/End: Complemental strand, 12483484 - 12483384
Alignment:
Q  209 gagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagata 308  Q
    ||||||||  || ||| |||||||||| ||||| || |||||||| |||||||||||  | |  | |||||| |||||||| || |||||||| ||||||    
T  12483484 gagagtgaaaactgagtgccacaatggattccatcttttggagagaatgcttgtggcagcagattgtttggtagggagaaaagaaagaatgtggcagata 12483385  T
Q  309 a 309  Q
    |    
T  12483384 a 12483384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 309
Target Start/End: Complemental strand, 12504914 - 12504814
Alignment:
Q  209 gagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagata 308  Q
    ||||||||  || ||| |||||||||| ||||| || |||||||| |||||||||||  | |  | |||||| |||||||| || |||||||| ||||||    
T  12504914 gagagtgaaaactgagtgccacaatggattccatcttttggagagaatgcttgtggcagcagattgtttggtagggagaaaagaaagaatgtggcagata 12504815  T
Q  309 a 309  Q
    |    
T  12504814 a 12504814  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 12623777 - 12623833
Alignment:
Q  207 tcgagagtgaggacagagagccacaatgg-tttccacctcttggagaggatgcttgt 262  Q
    ||||||||||| || ||||||||||| || |||||| || |||||||||||||||||    
T  12623777 tcgagagtgagaactgagagccacaacggatttccatcttttggagaggatgcttgt 12623833  T

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Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 337
Target Start/End: Complemental strand, 6687406 - 6687163
Alignment:
Q  100 tgaagcggaatgatcgtattggcagtgtgttgtcacgcgatagcatgattgagtaaacatgactgcaaagagtggtttcgttcatgaaggctg---tttg 196  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||  ||||||| | ||| |||||||| || |  ||  | |||||  |   | |     
T  6687406 tgaagcggaatgatcgtattggcagattgttgtcacgcgatagcatgacggagtaaataagacagcaaagaggggctgtgtcgaggaaggtggaggtgta 6687307  T
Q  197 gtcgatgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacgg---tgtctttggttgggagaaaggag 293  Q
    |||||||||||||||||| | ||| |||||||| ||||||||||| ||||| |||||||||||||||||||| |   ||||||||||||| ||||| |||    
T  6687306 gtcgatgaaatcgagagttaagactgagagccataatggtttccatctcttcgagaggatgcttgtggcgacagtactgtctttggttggaagaaatgag 6687207  T
Q  294 agaatgtgacagataattgagtccggaagggagctaaccctgtc 337  Q
    ||||| ||||| ||||||||||  ||||||||||||||||||||    
T  6687206 agaatatgacaaataattgagtatggaagggagctaaccctgtc 6687163  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 44253303 - 44253247
Alignment:
Q  274 ctttggttgggagaaaggagagaatgtgacagataattgagtccggaagggagctaa 330  Q
    |||||||||| ||||| |||||||||||| | |||||||| || |||| ||||||||    
T  44253303 ctttggttggaagaaaagagagaatgtgagatataattgaatctggaaaggagctaa 44253247  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 35396188 - 35396089
Alignment:
Q  210 agagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataa 309  Q
    ||||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||| | | |  | |||||| |||||||| ||||||||||| |||||||    
T  35396188 agagtgaggacggagagccacaatgggttccatctcttagagaggatgctagtggtggcagattgtttggtagggagaaacgagagaatgtggcagataa 35396089  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 5387801 - 5387876
Alignment:
Q  237 ttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattg 312  Q
    ||||||||| | |||||||||||||||| | | |||| |||||| || ||||| ||||||||| |||| |||||||    
T  5387801 ttccacctcgttgagaggatgcttgtggtggccgtgtgtttggtaggaagaaaagagagaatgagacaaataattg 5387876  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 56164527 - 56164454
Alignment:
Q  225 agccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaat 298  Q
    ||||| ||||| ||||||  ||| ||||||| |||||||||||| | |||||||||||||||||| ||||||||    
T  56164527 agccataatggattccactgcttcgagaggacgcttgtggcgaccgagtctttggttgggagaaaagagagaat 56164454  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 15330472 - 15330544
Alignment:
Q  193 tttggtcgatgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggc 265  Q
    ||||||||  ||| ||||||||||| || ||  |||||||||| | ||| || ||||||||||||||||||||    
T  15330472 tttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccatcttttggagaggatgcttgtggc 15330544  T

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