View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9038_low_1 (Length: 410)
Name: NF9038_low_1
Description: NF9038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9038_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 44 - 385
Target Start/End: Original strand, 31333325 - 31333666
Alignment:
| Q |
44 |
tgctatgaagtttgaattgtgaatttataatggtttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata |
143 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31333325 |
tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata |
31333424 |
T |
|
| Q |
144 |
tgctcatcatgttacgtgcgcatgacaaatgaataagttattaagctattgattgtggagtgcgttgcattgcttgtcgtcgctttgccatgacttatat |
243 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31333425 |
tgctcatcatgttatgtgagcatgacaaatgaataagttattaagctattgattgtggagtgcattgcattgcttgtcgtcgctttgccatgacttatat |
31333524 |
T |
|
| Q |
244 |
tacttgaacaaattcttgtgtcctccttattgaagttctctttggtagcatgggttttgcatatttgttgcatacttttctttgtagttacttttctgaa |
343 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31333525 |
tacttgaacaaattcttatgtcctacttattgaagttctctttggtagcatgggttttgcatatttgttgcatacttttctttgtagttacttttctgaa |
31333624 |
T |
|
| Q |
344 |
tatataaaatcaataaaatctctgtaaaccatctttatttat |
385 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31333625 |
tatataaaatcaataaaatctctgtaaaacatctttatttat |
31333666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 44 - 385
Target Start/End: Original strand, 31340055 - 31340396
Alignment:
| Q |
44 |
tgctatgaagtttgaattgtgaatttataatggtttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31340055 |
tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata |
31340154 |
T |
|
| Q |
144 |
tgctcatcatgttacgtgcgcatgacaaatgaataagttattaagctattgattgtggagtgcgttgcattgcttgtcgtcgctttgccatgacttatat |
243 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
31340155 |
tgctcatcatgttatgtgtgcatgacaaatgaataagttattaagctattgattgtggagtgcattgcattgcttgtcgtcgctttgccatgacttatat |
31340254 |
T |
|
| Q |
244 |
tacttgaacaaattcttgtgtcctccttattgaagttctctttggtagcatgggttttgcatatttgttgcatacttttctttgtagttacttttctgaa |
343 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31340255 |
tacttgaacaaattcttatgtcctacttattgaagttctctttggtagcatgggttttgcatatttgttgcatacttttctttgtagttacttttctgaa |
31340354 |
T |
|
| Q |
344 |
tatataaaatcaataaaatctctgtaaaccatctttatttat |
385 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
31340355 |
tatataaaatcaataaaatctctgtaaaacatctttatttat |
31340396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 45245523 - 45245572
Alignment:
| Q |
317 |
acttttctttgtagttacttttctgaatatataaaatcaataaaatctct |
366 |
Q |
| |
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|||||||| || ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
45245523 |
acttttctctgctgttacttttctgaatatataaaatcaatagaatctct |
45245572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 644672 - 644374
Alignment:
| Q |
19 |
cttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataatggtttttgttttcagatttacttctatgagaaattacttttgtt |
118 |
Q |
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|
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
644672 |
cttatcacggcaaggatgtcttgtttgctatgaagtttgaattgtgaatttctaatgtttttggttttcagatttacttctatgagaaattacttttgtt |
644573 |
T |
|
| Q |
119 |
ttctttctgaacgtaattgtatatatgctcatcatgttacgtgcgcatgacaaatgaataagttatt------------aagctattgattgtggagtgc |
206 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
644572 |
ctcttttttaacgtaattgtatatatgctcatcatgttatgtgtgcatgacaaatgaataagttattaatatataatgcaagctattgattgtggagtgc |
644473 |
T |
|
| Q |
207 |
gttgcattgcttgtcgtcgctttgccatgacttatattacttgaacaaattcttgtgtcctccttattgaagttctctttggtagcatgggttttgcat |
305 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||| |
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| T |
644472 |
attgcattgcttgttgtcgctttgccatgacttatattacttgaacaaattcttgtttcctacttatttaagttctctttggtagcatgggttttgcat |
644374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 296 - 385
Target Start/End: Complemental strand, 644356 - 644267
Alignment:
| Q |
296 |
ggttttgcatatttgttgcatacttttctttgtagttacttttctgaatatataaaatcaataaaatctctgtaaaccatctttatttat |
385 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
644356 |
ggttttgcatatttgtagcatacttttccttatagttacttttctgaatatataaaatcaataaaatctctgtaaaaaatctttatttat |
644267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 546622 - 546594
Alignment:
| Q |
80 |
ttgttttcagatttacttctatgagaaat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
546622 |
ttgttttcagatttacttctatgagaaat |
546594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 1657080 - 1656879
Alignment:
| Q |
19 |
cttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataatggtttttgttttcagatttacttctatgagaaattacttttgtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1657080 |
cttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgtt |
1656981 |
T |
|
| Q |
119 |
ttctttctgaacgtaattgtatatatgctcatcatgttacgtgcgcatgacaaatgaataagttattaagctattgattgtggagtgcgttgcattgctt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
1656980 |
ttctttctgaacgtaattgtatatatgctcatcatgttatgtgcgcatgacaaatgaataagttattaagctattgattgtggagtgcattgcattgctt |
1656881 |
T |
|
| Q |
219 |
gt |
220 |
Q |
| |
|
|| |
|
|
| T |
1656880 |
gt |
1656879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 28246563 - 28246654
Alignment:
| Q |
19 |
cttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataatggtttttgttttcagatttacttctatgagaaatta |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28246563 |
cttatcacatcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaatta |
28246654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 11936545 - 11936599
Alignment:
| Q |
19 |
cttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataa |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11936545 |
cttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataa |
11936599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 11948525 - 11948579
Alignment:
| Q |
19 |
cttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataa |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11948525 |
cttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataa |
11948579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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