View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9038_low_4 (Length: 327)
Name: NF9038_low_4
Description: NF9038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9038_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 10010238 - 10009945
Alignment:
| Q |
14 |
ttggtgttcttggagtaattttggaatgaagacaaaatatcacatctcatatctgtaaaataatgcagcaagggagttggtcaggatgttactttactat |
113 |
Q |
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| T |
10010238 |
ttggtgttcttggagtaattttggaatgaagacaaaatatcacatctcatatctgtaaaataatgcagcaagggagttggtcaggatgttactttactat |
10010139 |
T |
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| Q |
114 |
ttaaaggactttttaaagttttgtgccgcttttttacgttgtcatggggctgattcaattgcagaaattagctcattatgagcttatggcaagggttgaa |
213 |
Q |
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| T |
10010138 |
ttaaaggactttttaaagttttgtgccgcttttttacgttgtcatggggctgattcaattgcagaaattagctctgtatgggcttatggcaagggttgaa |
10010039 |
T |
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| Q |
214 |
aggcatgttataggagtagtgaagctttgcctcaaatatcattaatggattggtaatgctttgttaaggctatgttgcaggtaaacagtgaataa |
308 |
Q |
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| T |
10010038 |
aggcatgttataggagtagtgaagctttgcctcaaatatcattaatggattggtaatggtttgttaaggctatgttgca-gtaaacagtgaataa |
10009945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 47248710 - 47248980
Alignment:
| Q |
20 |
ttcttggagtaattttggaatgaagacaaaatatcacatctcatatctgtaaaataatgcagcaagggagttggtcaggatgttactttactatttaaag |
119 |
Q |
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| T |
47248710 |
ttcttgaagtagttttggattgaaggcaaaagatcacaacttttacctgtaaaattatgcagcaaaggagttggtcagaatgttgctttactatttaaag |
47248809 |
T |
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| Q |
120 |
gactttttaaagttttgtgccgcttttttacgttgtcatggggctgattcaattgcagaaattagctcattatgagcttatggcaagggttgaaaggcat |
219 |
Q |
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| T |
47248810 |
gaatttttcaagtttgctgccgcttttttaaattgtcatggagctgattcagttgtagaaattagctcattatgggcttatggcaagggctgaaaggcat |
47248909 |
T |
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| Q |
220 |
gttataggagtagtgaagctttgcctcaaatatcattaatggattggtaatgctttgttaaggctatgttg |
290 |
Q |
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| T |
47248910 |
gttctaggagtagtgaagctttgcctcaaatatcatttatggattggtaatggtttgttaaggctatgttg |
47248980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 42310637 - 42310391
Alignment:
| Q |
32 |
ttttggaatgaagacaaaatatcacatctcatatctgtaaaataatgcagcaagggagttggtcaggatgttactttactatttaaaggactttttaaag |
131 |
Q |
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| T |
42310637 |
ttttggattgaaggcaaaatatcacaacttctacctgtaaaattatgcagcaaaggaggtggtcagaatgttactttactatttaaaggaatttttcaag |
42310538 |
T |
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| Q |
132 |
ttttgtgccgcttttttacgttgtcatggggctgattcaattgcagaaattagctcattatgagcttatggcaagggttgaaaggcatgttataggagta |
231 |
Q |
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||| ||||||||||||||| ||||||||| ||||||| | |||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| |
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| T |
42310537 |
tttggtgccgcttttttacattgtcatggagctgattaagttgcagaaattagctcattatgggcttatggcaagggctgaaaggcatgttctaggagtg |
42310438 |
T |
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| Q |
232 |
gtgaagctttgcctcaaatatcattaatggattggtaatgctttgtt |
278 |
Q |
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| T |
42310437 |
gtgaagttttgcctcaaatatcatttatggattggtaaggctatgtt |
42310391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 277
Target Start/End: Complemental strand, 12459933 - 12459841
Alignment:
| Q |
185 |
ctcattatgagcttatggcaagggttgaaaggcatgttataggagtagtgaagctttgcctcaaatatcattaatggattggtaatgctttgt |
277 |
Q |
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||||||| |||||||| ||||| | ||||||| |||| | |||| |||||||||||| ||||||||||||| ||| ||||| |||| ||||| |
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| T |
12459933 |
ctcattaggagcttatagcaagtgatgaaaggtgtgttcttggagcagtgaagctttgtctcaaatatcattgatgtattggaaatggtttgt |
12459841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 12390559 - 12390512
Alignment:
| Q |
246 |
caaatatcattaatggattggtaatgctttgttaaggctatgttgcag |
293 |
Q |
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| T |
12390559 |
caaatatcattgatggattggaaatggtttgttaaggctatgttgcag |
12390512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 40141197 - 40141289
Alignment:
| Q |
214 |
aggcatgttataggagtagtgaagctttgcctcaaatatcattaatggattggtaatgctttgttaaggctatgttgcaggtaaacagtgaataa |
308 |
Q |
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|||| |||| ||||||||||| || ||||| ||||||||||| ||||||||| |||| |||||| ||||||||||| | |||||| |||||||| |
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| T |
40141197 |
aggcgtgttttaggagtagtgtaggtttgca-caaatatcattgatggattggaaatggtttgtttaggctatgttgta-gtaaacggtgaataa |
40141289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 16044344 - 16044426
Alignment:
| Q |
224 |
taggagtagtgaagctttgcctcaaatatcattaatggattggtaatgctttgttaaggctatgttgcaggtaaacagtgaataa |
308 |
Q |
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| T |
16044344 |
taggagtagtgtaggtttgca-caaatatcactgatggattggaaatggtttgttgaggctatgttgca-gtaaacggtgaataa |
16044426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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