View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9038_low_5 (Length: 300)
Name: NF9038_low_5
Description: NF9038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9038_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 21415668 - 21415940
Alignment:
| Q |
1 |
gagaacagaatatggaactggtggaagtagtgaatgagctgcttacacgctgttcacttttgcttttcatcttctgtcttcttcattggttaccacactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21415668 |
gagaacagaatatggaactggtggaagtagtgaatgagctgcttacacgctgttcccttttgcttttcatcttctgtcttcttcattggttaccacactt |
21415767 |
T |
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| Q |
101 |
gtcaccaaaatgtttgtgacgtggaaatattatgtcattgtg--tatatatagtatggttttcatagatttcattctcagttcagttaccagtttctatt |
198 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21415768 |
gtcaccgaaatgtttgtgacgtggaaatattatgtcattgtgtatatatatagtatggttttcatagatttcattctcagttcagttaccagtttctatt |
21415867 |
T |
|
| Q |
199 |
cacaaatcacaacagtaactaaatttggacatataaacacacctggtaaagtgagtttgaacgtggtgggtgt |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21415868 |
cacaaatcacaacagtaactaaatttggacatataaacacacctggtaaagtgagtttgaacgtggtgggtgt |
21415940 |
T |
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