View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9038_low_6 (Length: 240)
Name: NF9038_low_6
Description: NF9038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9038_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 47735745 - 47735943
Alignment:
| Q |
19 |
accttgctataacaaattccaaggattcaacttccattgtcaatggtaattgatggtttaaatcaaagagtaacgccgttccctgcaaattcttacattg |
118 |
Q |
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| T |
47735745 |
accttgctataacaaattccaaggattcaacttccattgtcaatggtaattgatggtttaaatcaaagagtaacgccgttccctgcaaattcttacattg |
47735844 |
T |
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| Q |
119 |
tcagtactaaaaatgaaatccgttcataatttcgttgctaagtgttacatatatca-ttttttcggtccataatttccgttggtaacttaatttattta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47735845 |
tcagtactaaaaatgaaatccgttcataatttcgttgctaagtgttacatatatcatttttttcggtccataatttccgttggtaactcaatttattta |
47735943 |
T |
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