View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9039_low_1 (Length: 387)
Name: NF9039_low_1
Description: NF9039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9039_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 39230239 - 39229869
Alignment:
| Q |
16 |
ctttggacacaagtta--cctatagatggtagataacaacctctttcactaaggtgttcatcgatgggcaatttgtcatgcattaatttcaaagcaagaa |
113 |
Q |
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| T |
39230239 |
ctttggacacaagttatacatatagatggtagataacaacctctttcactaaggtgttcatcgatgggcaatttgtcatgcattaatttcaaagcaagaa |
39230140 |
T |
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| Q |
114 |
aagattttgaaggtgagatatccttgtgccaaatgagtttggccctgttaagattttaatacaaaggggagtaacattttgctttaataaatcaatactt |
213 |
Q |
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| T |
39230139 |
aagattttgaagctgagatatccttgtgccaaatgagtttggccctgttaagattttaatacaaaggggagtaacattttgctttaataaatcaatactt |
39230040 |
T |
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| Q |
214 |
ataaattacaaacaatgtatgtactcccattgaaaaaatcaaattaaaattacatgtaccagaacctcattttaatgatttaaaacttttctcgttgttg |
313 |
Q |
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|||||||||||||||| || |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39230039 |
ataaattacaaacaatataagtactcccgttgaaaaaatcaaattaaaattacatgtactagaacctcattttaatgatttaaaacttttctcgttgttg |
39229940 |
T |
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| Q |
314 |
accaagaaaagaaactatcaagtcacaactctggtagactggtactagcagcatacactaattagctatagcct |
387 |
Q |
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||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |
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| T |
39229939 |
accaagaaaagaaactatcaagtcacaactctggt--actag-cgtagcagcatacactaattagctatagcct |
39229869 |
T |
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