View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9039_low_3 (Length: 365)
Name: NF9039_low_3
Description: NF9039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9039_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 90 - 348
Target Start/End: Original strand, 52987602 - 52987874
Alignment:
| Q |
90 |
ggcaagatgcactaaacaaagaaatgtttgcataaaaaactatcatctattcatcccacaattctggtccctgtatcaagatcaagatgttgtagcctat |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52987602 |
ggcaagatgcactaaacaaagaaatgtttgcataaaaaactatcatctattcatcccacaattctggtccctgtatcaagatcaagatgttgtagcctat |
52987701 |
T |
|
| Q |
190 |
taaatataaccaattgcaattatttatttaaagtt--------------ttccatatggtaaacattactgtgcataaacaagattgctaactttgttgc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
52987702 |
taaatataaccaattgcaattatttatttaaagttttccatatttgttattccatatggtaaacattaatttgcataaacaagattgctaactttgttgc |
52987801 |
T |
|
| Q |
276 |
ttatgctgcctggagtcagttacacctattctgtaacaatttctgataaacctacaaaactaccagcccctga |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
52987802 |
ttatgctgcctggagtcagttacacctattctgtaacaatttctgataaacctacgaaactaccagcccctga |
52987874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 52987515 - 52987551
Alignment:
| Q |
2 |
ttgtcatttcgtgcttattaaatgatgaagaaagtaa |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52987515 |
ttgtcatttcgtgcttattaaatgatgaagaaagtaa |
52987551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University